Preparatory Material

Introduction to Neuroimaging and FSL

Introductory Lecture (2 videos)

Introduction to UNIX

Practicals (5 video walk-throughs)

Practical Data

Introductory FSL Practicals

Overview Videos:
Image Viewer (FSLeyes), Brain Extraction (BET), and Command-line FSL Utils

Written Instructions:
Image Viewer (FSLeyes), Brain Extraction (BET), and Command-line FSL Utils

Practical Data

Main Course Material

Registration: Image Registration and Distortion Correction

Structural: Segmentation and Structural Analysis

fMRI 1: Statistics & Task fMRI: Basic GLM and Single-Subject Analysis

fMRI 2: Statistics & Task fMRI: Inference and Group Analysis

fMRI 3: Statistics & Task fMRI: Advanced GLM and Noise Correction

Resting State (ICA): Resting-State fMRI: ICA and Dual Regression

Resting state (FSLNets): Resting-State fMRI: Network Analysis with FSLNETS

Diffusion (DTI): Diffusion: Diffusion Tensor Imaging and TBSS

Diffusion (Tractography): Diffusion: Diffusion Tractography

Advanced FSL materials