Index

_

__addFlag() (fsl.wrappers.fslstats.fslstats method) __annotations__ (fsl.data.atlases.Atlas attribute) (fsl.data.atlases.LabelAtlas attribute) (fsl.data.atlases.ProbabilisticAtlas attribute) (fsl.data.atlases.StatisticAtlas attribute) (fsl.data.cifti.DenseCifti attribute) (fsl.data.cifti.ParcelCifti attribute) (fsl.data.dicom.DicomImage attribute) (fsl.data.dtifit.DTIFitTensor attribute) (fsl.data.featdesign.BasisFunctionEV attribute) (fsl.data.featdesign.ConfoundEV attribute) (fsl.data.featdesign.MotionParameterEV attribute) (fsl.data.featdesign.NormalEV attribute) (fsl.data.featdesign.TemporalDerivativeEV attribute) (fsl.data.featdesign.VoxelwiseConfoundEV attribute) (fsl.data.featdesign.VoxelwiseEV attribute) (fsl.data.featimage.FEATImage attribute) (fsl.data.freesurfer.FreesurferMesh attribute) (fsl.data.gifti.GiftiMesh attribute) (fsl.data.image.Image attribute) (fsl.data.image.Nifti attribute) (fsl.data.imagewrapper.ImageWrapper attribute) (fsl.data.melodicimage.MelodicImage attribute) (fsl.data.mesh.Mesh attribute) (fsl.data.mghimage.MGHImage attribute) (fsl.data.volumelabels.VolumeLabels attribute) (fsl.data.vtk.VTKMesh attribute) (fsl.transform.nonlinear.CoefficientField attribute) (fsl.transform.nonlinear.DeformationField attribute) (fsl.transform.nonlinear.NonLinearTransform attribute) (fsl.utils.filetree.utils.Literal attribute) (fsl.utils.filetree.utils.Optional attribute) (fsl.utils.filetree.utils.Required attribute) (fsl.utils.fslsub.SubmitParams attribute) (fsl.utils.meta.Meta attribute) (fsl.utils.notifier.Notifier attribute) (fsl.utils.path.PathError attribute) (fsl.utils.platform.Platform attribute) __call__() (fsl.utils.fslsub.SubmitParams method) (fsl.utils.memoize.Instanceify method) (fsl.utils.memoize.Memoize method) (fsl.utils.weakfuncref.WeakFunctionRef method) (fsl.wrappers.wrapperutils.FileOrThing method) __contains__() (fsl.utils.cache.Cache method) __dataclass_fields__ (fsl.utils.fslsub.SubmitParams attribute) __dataclass_params__ (fsl.utils.fslsub.SubmitParams attribute) __del__() (fsl.data.featdesign.VoxelwiseEVMixin method) (fsl.data.featimage.FEATImage method) (fsl.data.image.Image method) (fsl.data.image.Nifti method) (fsl.data.imagewrapper.ImageWrapper method) __dict__ (fsl.data.atlases.AtlasDescription attribute) (fsl.data.atlases.AtlasLabel attribute) (fsl.data.bitmap.Bitmap attribute) (fsl.data.cifti.BrainStructure attribute) (fsl.data.cifti.Cifti attribute) (fsl.data.featdesign.EV attribute) (fsl.data.featdesign.FEATFSFDesign attribute) (fsl.data.featdesign.VoxelwiseEVMixin attribute) (fsl.data.image.DataManager attribute) (fsl.utils.bids.BIDSFile attribute) (fsl.utils.cache.Cache attribute) (fsl.utils.cache.CacheItem attribute) (fsl.utils.filetree.filetree.FileTree attribute) (fsl.utils.filetree.query.FileTreeQuery attribute) (fsl.utils.filetree.query.Match attribute) (fsl.utils.filetree.utils.Part attribute) (fsl.utils.filetree.utils.Template attribute) (fsl.utils.fslsub.SubmitParams attribute) (fsl.utils.idle.IdleLoop attribute) (fsl.utils.idle.IdleTask attribute) (fsl.utils.idle.MutexFactory attribute) (fsl.utils.idle.Task attribute) (fsl.utils.memoize.Instanceify attribute) (fsl.utils.memoize.Memoize attribute) (fsl.utils.meta.Meta attribute) (fsl.utils.notifier._Listener attribute) (fsl.utils.notifier.Notifier attribute) (fsl.utils.settings.Settings attribute) (fsl.utils.weakfuncref.WeakFunctionRef attribute) (fsl.wrappers.fslmaths.fslmaths attribute) (fsl.wrappers.fslstats.fslstats attribute) (fsl.wrappers.wrapperutils.FileOrThing attribute) (fsl.wrappers.wrapperutils.FileOrThing.Results attribute) (fsl.wrappers.wrapperutils.wrapperconfig attribute) __dir__() (in module fsl.wrappers.dtifit) __enter__() (fsl.wrappers.wrapperutils.wrapperconfig method) __eq__() (fsl.data.atlases.AtlasDescription method) (fsl.data.atlases.AtlasLabel method) (fsl.data.cifti.BrainStructure method) (fsl.utils.filetree.query.Match method) (fsl.utils.fslsub.SubmitParams method) __exit__() (fsl.wrappers.wrapperutils.wrapperconfig method) __expandCoverage() (fsl.data.imagewrapper.ImageWrapper method) __findPrivateMethod() (fsl.utils.weakfuncref.WeakFunctionRef method) __fixPath() (fsl.utils.settings.Settings method) __format__() (in module fsl.wrappers.dtifit) __ge__() (fsl.utils.filetree.query.Match method) __generateResult() (fsl.wrappers.wrapperutils.FileOrThing method) __get__() (fsl.utils.idle.MutexFactory method) (fsl.utils.memoize.Instanceify method) __getattr__() (fsl.wrappers.fslstats.fslstats method) __getConfigDir() (fsl.utils.settings.Settings method) __getData() (fsl.data.imagewrapper.ImageWrapper method) __getitem__() (fsl.data.image.DataManager method) (fsl.data.image.Image method) (fsl.data.imagewrapper.ImageWrapper method) (fsl.utils.cache.Cache method) __getKnownAtlases() (fsl.data.atlases.AtlasRegistry method) __getListeners() (fsl.utils.notifier.Notifier method) __gt__() (fsl.utils.filetree.query.Match method) __hash__ (fsl.data.atlases.AtlasDescription attribute) (fsl.data.atlases.AtlasLabel attribute) (fsl.data.cifti.BrainStructure attribute) (fsl.utils.filetree.query.Match attribute) (fsl.utils.fslsub.SubmitParams attribute) __hash__() (fsl.data.bitmap.Bitmap method) (fsl.data.image.Image method) __headerChanged() (fsl.data.image.Image method) __idleLoop() (fsl.utils.idle.IdleLoop method) __imageIsCovered() (fsl.data.imagewrapper.ImageWrapper method) __init__() (fsl.data.atlases.Atlas method) (fsl.data.atlases.AtlasDescription method) (fsl.data.atlases.AtlasLabel method) (fsl.data.atlases.AtlasRegistry method) (fsl.data.atlases.LabelAtlas method) (fsl.data.atlases.StatisticAtlas method) (fsl.data.bitmap.Bitmap method) (fsl.data.cifti.BrainStructure method) (fsl.data.cifti.Cifti method) (fsl.data.cifti.DenseCifti method) (fsl.data.cifti.ParcelCifti method) (fsl.data.dicom.DicomImage method) (fsl.data.dtifit.DTIFitTensor method) (fsl.data.featdesign.ConfoundEV method) (fsl.data.featdesign.EV method) (fsl.data.featdesign.FEATFSFDesign method) (fsl.data.featdesign.MotionParameterEV method) (fsl.data.featdesign.NormalEV method) (fsl.data.featdesign.VoxelwiseConfoundEV method) (fsl.data.featdesign.VoxelwiseEV method) (fsl.data.featdesign.VoxelwiseEVMixin method) (fsl.data.featimage.FEATImage method) (fsl.data.freesurfer.FreesurferMesh method) (fsl.data.gifti.GiftiMesh method) (fsl.data.image.Image method) (fsl.data.image.Nifti method) (fsl.data.imagewrapper.ImageWrapper method) (fsl.data.melodicimage.MelodicImage method) (fsl.data.mesh.Mesh method) (fsl.data.mghimage.MGHImage method) (fsl.data.volumelabels.VolumeLabels method) (fsl.data.vtk.VTKMesh method) (fsl.transform.nonlinear.CoefficientField method) (fsl.transform.nonlinear.DeformationField method) (fsl.transform.nonlinear.NonLinearTransform method) (fsl.utils.bids.BIDSFile method) (fsl.utils.cache.Cache method) (fsl.utils.cache.CacheItem method) (fsl.utils.filetree.filetree.FileTree method) (fsl.utils.filetree.query.FileTreeQuery method) (fsl.utils.filetree.query.Match method) (fsl.utils.filetree.utils.Literal method) (fsl.utils.filetree.utils.Optional method) (fsl.utils.filetree.utils.Required method) (fsl.utils.filetree.utils.Template method) (fsl.utils.fslsub.SubmitParams method) (fsl.utils.idle.IdleLoop method) (fsl.utils.idle.IdleTask method) (fsl.utils.idle.MutexFactory method) (fsl.utils.idle.Task method) (fsl.utils.idle.TaskThread method) (fsl.utils.memoize.Instanceify method) (fsl.utils.memoize.Memoize method) (fsl.utils.notifier._Listener method) (fsl.utils.platform.Platform method) (fsl.utils.settings.Settings method) (fsl.utils.weakfuncref.WeakFunctionRef method) (fsl.wrappers.fslmaths.fslmaths method) (fsl.wrappers.fslstats.fslstats method) (fsl.wrappers.wrapperutils.FileOrThing method) (fsl.wrappers.wrapperutils.FileOrThing.Results method) (fsl.wrappers.wrapperutils.wrapperconfig method) __init_subclass__() (in module fsl.wrappers.dtifit) __le__() (fsl.utils.filetree.query.Match method) __len__() (fsl.utils.cache.Cache method) __lt__() (fsl.data.atlases.AtlasDescription method) (fsl.data.atlases.AtlasLabel method) (fsl.utils.filetree.query.Match method) __makeKey() (fsl.utils.memoize.Memoize method) __match_args__ (fsl.utils.fslsub.SubmitParams attribute) __module__ (fsl.data.atlases.Atlas attribute) (fsl.data.atlases.AtlasDescription attribute) (fsl.data.atlases.AtlasLabel attribute) (fsl.data.atlases.AtlasRegistry attribute) (fsl.data.atlases.LabelAtlas attribute) (fsl.data.atlases.MaskError attribute) (fsl.data.atlases.ProbabilisticAtlas attribute) (fsl.data.atlases.StatisticAtlas attribute) (fsl.data.bitmap.Bitmap attribute) (fsl.data.cifti.BrainStructure attribute) (fsl.data.cifti.Cifti attribute) (fsl.data.cifti.DenseCifti attribute) (fsl.data.cifti.ParcelCifti attribute) (fsl.data.dicom.DicomImage attribute) (fsl.data.dtifit.DTIFitTensor attribute) (fsl.data.featdesign.BasisFunctionEV attribute) (fsl.data.featdesign.ConfoundEV attribute) (fsl.data.featdesign.EV attribute) (fsl.data.featdesign.FEATFSFDesign attribute) (fsl.data.featdesign.FSFError attribute) (fsl.data.featdesign.MotionParameterEV attribute) (fsl.data.featdesign.NormalEV attribute) (fsl.data.featdesign.TemporalDerivativeEV attribute) (fsl.data.featdesign.VoxelwiseConfoundEV attribute) (fsl.data.featdesign.VoxelwiseEV attribute) (fsl.data.featdesign.VoxelwiseEVMixin attribute) (fsl.data.featimage.FEATImage attribute) (fsl.data.fixlabels.InvalidLabelFileError attribute) (fsl.data.freesurfer.FreesurferMesh attribute) (fsl.data.gifti.GiftiMesh attribute) (fsl.data.image.DataManager attribute) (fsl.data.image.FileType attribute) (fsl.data.image.Image attribute) (fsl.data.image.Nifti attribute) (fsl.data.image.PathError attribute) (fsl.data.imagewrapper.ImageWrapper attribute) (fsl.data.melodicimage.MelodicImage attribute) (fsl.data.mesh.IncompatibleVerticesError attribute) (fsl.data.mesh.Mesh attribute) (fsl.data.mghimage.MGHImage attribute) (fsl.data.volumelabels.VolumeLabels attribute) (fsl.data.vtk.VTKMesh attribute) (fsl.scripts.atlasq.HelpFormatter attribute) (fsl.scripts.atlasq.IdentifyError attribute) (fsl.transform.nonlinear.CoefficientField attribute) (fsl.transform.nonlinear.DeformationField attribute) (fsl.transform.nonlinear.NonLinearTransform attribute) (fsl.transform.x5.X5Error attribute) (fsl.utils.bids.BIDSFile attribute) (fsl.utils.cache.Cache attribute) (fsl.utils.cache.CacheItem attribute) (fsl.utils.cache.Expired attribute) (fsl.utils.filetree.filetree.FileTree attribute) (fsl.utils.filetree.filetree.MissingVariable attribute) (fsl.utils.filetree.query.FileTreeQuery attribute) (fsl.utils.filetree.query.Match attribute) (fsl.utils.filetree.utils.Literal attribute) (fsl.utils.filetree.utils.Optional attribute) (fsl.utils.filetree.utils.Part attribute) (fsl.utils.filetree.utils.Required attribute) (fsl.utils.filetree.utils.Template attribute) (fsl.utils.fslsub.SubmitParams attribute) (fsl.utils.idle.IdleLoop attribute) (fsl.utils.idle.IdleTask attribute) (fsl.utils.idle.MutexFactory attribute) (fsl.utils.idle.Task attribute) (fsl.utils.idle.TaskThread attribute) (fsl.utils.idle.TaskThreadVeto attribute) (fsl.utils.memoize.Instanceify attribute) (fsl.utils.memoize.Memoize attribute) (fsl.utils.meta.Meta attribute) (fsl.utils.notifier._Listener attribute) (fsl.utils.notifier.Notifier attribute) (fsl.utils.notifier.Registered attribute) (fsl.utils.path.PathError attribute) (fsl.utils.platform.Platform attribute) (fsl.utils.run.FSLNotPresent attribute) (fsl.utils.settings.Settings attribute) (fsl.utils.weakfuncref.WeakFunctionRef attribute) (fsl.wrappers.fslmaths.fslmaths attribute) (fsl.wrappers.fslstats.fslstats attribute) (fsl.wrappers.wrapperutils.FileOrThing attribute) (fsl.wrappers.wrapperutils.FileOrThing.Results attribute) (fsl.wrappers.wrapperutils.wrapperconfig attribute)

__neq__() (fsl.data.atlases.AtlasDescription method) (fsl.data.atlases.AtlasLabel method) __new__() (fsl.utils.meta.Meta static method) (fsl.utils.notifier.Notifier static method) (in module fsl.wrappers.dtifit) __parseDefault() (fsl.utils.cache.Cache method) __post_init__() (fsl.utils.fslsub.SubmitParams method) __prepareArgs() (fsl.wrappers.wrapperutils.FileOrThing method) __readConfigFile() (fsl.utils.settings.Settings method) __reduce__() (in module fsl.wrappers.dtifit) __reduce_ex__() (in module fsl.wrappers.dtifit) __repr__() (fsl.data.atlases.AtlasDescription method) (fsl.data.atlases.AtlasLabel method) (fsl.data.bitmap.Bitmap method) (fsl.data.image.Image method) (fsl.data.mesh.Mesh method) (fsl.utils.bids.BIDSFile method) (fsl.utils.filetree.query.Match method) (fsl.utils.fslsub.SubmitParams method) (fsl.utils.notifier._Listener method) (fsl.utils.weakfuncref.WeakFunctionRef method) __run() (fsl.wrappers.fslmaths.fslmaths method) (fsl.wrappers.fslstats.fslstats method) __saveKnownAtlases() (fsl.data.atlases.AtlasRegistry method) __setFunction() (fsl.utils.memoize.Memoize method) __setitem__() (fsl.data.image.DataManager method) (fsl.data.image.Image method) (fsl.data.imagewrapper.ImageWrapper method) (fsl.utils.cache.Cache method) (fsl.wrappers.wrapperutils.FileOrThing.Results method) __sizeof__() (in module fsl.wrappers.dtifit) __str__() (fsl.data.bitmap.Bitmap method) (fsl.data.cifti.BrainStructure method) (fsl.data.image.Image method) (fsl.data.mesh.Mesh method) (fsl.utils.bids.BIDSFile method) (fsl.utils.filetree.query.Match method) (fsl.utils.filetree.utils.Literal method) (fsl.utils.filetree.utils.Optional method) (fsl.utils.filetree.utils.Required method) (fsl.utils.filetree.utils.Template method) (fsl.utils.fslsub.SubmitParams method) (fsl.utils.notifier._Listener method) (fsl.utils.weakfuncref.WeakFunctionRef method) __subclasshook__() (in module fsl.wrappers.dtifit) __updateDataRangeOnRead() (fsl.data.imagewrapper.ImageWrapper method) __updateDataRangeOnWrite() (fsl.data.imagewrapper.ImageWrapper method) __version__ (in module fsl.version) __weakref__ (fsl.data.atlases.AtlasDescription attribute) (fsl.data.atlases.AtlasLabel attribute) (fsl.data.atlases.MaskError attribute) (fsl.data.bitmap.Bitmap attribute) (fsl.data.cifti.BrainStructure attribute) (fsl.data.cifti.Cifti attribute) (fsl.data.featdesign.EV attribute) (fsl.data.featdesign.FEATFSFDesign attribute) (fsl.data.featdesign.FSFError attribute) (fsl.data.featdesign.VoxelwiseEVMixin attribute) (fsl.data.fixlabels.InvalidLabelFileError attribute) (fsl.data.image.DataManager attribute) (fsl.data.image.PathError attribute) (fsl.data.mesh.IncompatibleVerticesError attribute) (fsl.scripts.atlasq.IdentifyError attribute) (fsl.transform.x5.X5Error attribute) (fsl.utils.bids.BIDSFile attribute) (fsl.utils.cache.Cache attribute) (fsl.utils.cache.CacheItem attribute) (fsl.utils.cache.Expired attribute) (fsl.utils.filetree.filetree.FileTree attribute) (fsl.utils.filetree.filetree.MissingVariable attribute) (fsl.utils.filetree.query.FileTreeQuery attribute) (fsl.utils.filetree.query.Match attribute) (fsl.utils.filetree.utils.Part attribute) (fsl.utils.filetree.utils.Template attribute) (fsl.utils.fslsub.SubmitParams attribute) (fsl.utils.idle.IdleLoop attribute) (fsl.utils.idle.IdleTask attribute) (fsl.utils.idle.MutexFactory attribute) (fsl.utils.idle.Task attribute) (fsl.utils.idle.TaskThreadVeto attribute) (fsl.utils.memoize.Instanceify attribute) (fsl.utils.memoize.Memoize attribute) (fsl.utils.meta.Meta attribute) (fsl.utils.notifier._Listener attribute) (fsl.utils.notifier.Notifier attribute) (fsl.utils.notifier.Registered attribute) (fsl.utils.path.PathError attribute) (fsl.utils.run.FSLNotPresent attribute) (fsl.utils.settings.Settings attribute) (fsl.utils.weakfuncref.WeakFunctionRef attribute) (fsl.wrappers.fslmaths.fslmaths attribute) (fsl.wrappers.fslstats.fslstats attribute) (fsl.wrappers.wrapperutils.FileOrThing attribute) (fsl.wrappers.wrapperutils.FileOrThing.Results attribute) (fsl.wrappers.wrapperutils.wrapperconfig attribute) _buildMessageFormat() (in module fsl.utils.deprecated) _buildWarningSourceIdentity() (in module fsl.utils.deprecated) _canDisable() (in module fsl.utils.assertions) _canHaveGui() (in module fsl.utils.idle) _cluster() (in module fsl.wrappers.cluster_commands) _CONFIG_ID (in module fsl.utils.settings) _copy() (fsl.utils.filetree.filetree.FileTree method) _DISABLE_ASSERTIONS (in module fsl.utils.assertions) _dryrun() (in module fsl.utils.run) _fill_known_single() (fsl.utils.filetree.utils.Template method) _fillPoints() (in module fsl.transform.affine) _flatten_job_ids() (in module fsl.utils.fslsub) _format_usage() (fsl.scripts.atlasq.HelpFormatter method) _forwardStream() (in module fsl.utils.run) _fslmerge() (in module fsl.wrappers.avwutils) _fslmerge_n() (in module fsl.wrappers.avwutils) _fslmerge_tr() (in module fsl.wrappers.avwutils) _get_all_helper() (fsl.utils.filetree.utils.Template method) _get_template_tree() (fsl.utils.filetree.filetree.FileTree method) _haveGui() (in module fsl.utils.idle) _isfloat() (in module fsl.data.fixlabels) _Listener (class in fsl.utils.notifier) _normaliseBounds() (in module fsl.utils.image.roi) _parse_qstat() (in module fsl.utils.fslsub) _parseFullLabelFile() (in module fsl.data.fixlabels) _parseSingleLineLabelFile() (in module fsl.data.fixlabels) _readAffine() (in module fsl.transform.x5) _readDeformation() (in module fsl.transform.x5) _readFnirtCoefficientField() (in module fsl.transform.fnirt) _readFnirtDeformationField() (in module fsl.transform.fnirt) _readMetadata() (in module fsl.transform.x5) _readSpace() (in module fsl.transform.x5) _realrun() (in module fsl.utils.run) _smoothest() (in module fsl.wrappers.cluster_commands) _thread_id() (in module fsl.wrappers.wrapperutils) _unwrap() (in module fsl.wrappers.wrapperutils) _update_partial_fill() (fsl.utils.filetree.filetree.FileTree method) _update_wrapper() (in module fsl.wrappers.wrapperutils) _warned_cache (in module fsl.utils.deprecated) _writeAffine() (in module fsl.transform.x5) _writeDeformation() (in module fsl.transform.x5) _writeMetadata() (in module fsl.transform.x5) _writeSpace() (in module fsl.transform.x5)

A

abs() (fsl.wrappers.fslmaths.fslmaths method) absolute (fsl.transform.nonlinear.DeformationField property) acos() (fsl.wrappers.fslmaths.fslmaths method) active (fsl.wrappers.wrapperutils.wrapperconfig attribute) add() (fsl.wrappers.fslmaths.fslmaths method) add_to_parser() (fsl.utils.fslsub.SubmitParams class method) addargs() (fsl.wrappers.fslmaths.fslmaths method) addAtlas() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) addComponent() (fsl.data.volumelabels.VolumeLabels method) addExt() (in module fsl.data.image) (in module fsl.utils.path) addLabel() (fsl.data.volumelabels.VolumeLabels method) addVertexData() (fsl.data.mesh.Mesh method) addVertices() (fsl.data.mesh.Mesh method) adjust() (fsl.data.image.Nifti method) adjustCoverage() (in module fsl.data.imagewrapper) all_variables (fsl.utils.filetree.filetree.FileTree property) allFiles() (in module fsl.utils.path) ALLOWED_EXTENSIONS (in module fsl.data.gifti) (in module fsl.data.image) (in module fsl.data.mghimage) (in module fsl.data.vtk) allowErrors (fsl.utils.idle.IdleLoop property) allVariables() (in module fsl.utils.filetree.query) ANALYZE (fsl.data.image.FileType attribute) ANALYZE_GZ (fsl.data.image.FileType attribute) append_variables() (fsl.utils.filetree.utils.Optional method) (fsl.utils.filetree.utils.Part method) (fsl.utils.filetree.utils.Required method) applyArgStyle() (in module fsl.wrappers.wrapperutils) applyDeformation() (in module fsl.transform.nonlinear) applyLinear() (in module fsl.scripts.fsl_apply_x5)

applyNonlinear() (in module fsl.scripts.fsl_apply_x5) applySmoothing() (in module fsl.utils.image.resample) applytopup() (in module fsl.wrappers.eddy) applywarp() (in module fsl.wrappers.fnirt) applyxfm() (in module fsl.wrappers.flirt) applyxfm4D() (in module fsl.wrappers.flirt) architecture (fsl.utils.fslsub.SubmitParams attribute) ARG_OPTIONS (fsl.wrappers.fslstats.fslstats attribute) as_flags() (fsl.utils.fslsub.SubmitParams method) asDeformationField() (fsl.transform.nonlinear.CoefficientField method) asImage() (fsl.data.bitmap.Bitmap method) asin() (fsl.wrappers.fslmaths.fslmaths method) asl_file() (in module fsl.wrappers.oxford_asl) assertFileExists() (in module fsl.utils.assertions) assertIsFuncGifti() (in module fsl.utils.assertions) assertIsMelodicDir() (in module fsl.utils.assertions) assertIsNifti() (in module fsl.utils.assertions) assertIsNifti3D() (in module fsl.utils.assertions) assertIsNifti4D() (in module fsl.utils.assertions) assertIsSurfGifti() (in module fsl.utils.assertions) assertNiftiShape() (in module fsl.utils.assertions) atan() (fsl.wrappers.fslmaths.fslmaths method) Atlas (class in fsl.data.atlases) Atlas() (in module fsl.utils.parse_data) AtlasDescription (class in fsl.data.atlases) AtlasLabel (class in fsl.data.atlases) atlasOrDesc() (in module fsl.scripts.atlasq) atlasquery_emulation() (in module fsl.scripts.atlasq) AtlasRegistry (class in fsl.data.atlases) axes() (fsl.utils.filetree.query.FileTreeQuery method) axisAnglesToRotMat() (in module fsl.transform.affine) axisBounds() (in module fsl.transform.affine) axisMapping() (fsl.data.image.Nifti method)

B

BasisFunctionEV (class in fsl.data.featdesign) bedpostx() (in module fsl.wrappers.bedpostx) bedpostx_gpu() (in module fsl.wrappers.bedpostx) bedpostx_postproc_gpu() (in module fsl.wrappers.bedpostx) bet() (in module fsl.wrappers.bet) bianca() (in module fsl.wrappers.bianca) bianca_cluster_stats() (in module fsl.wrappers.bianca) bianca_overlap_measures() (in module fsl.wrappers.bianca) bianca_perivent_deep() (in module fsl.wrappers.bianca) BIDSFile (class in fsl.utils.bids)

bin() (fsl.wrappers.fslmaths.fslmaths method) binv() (fsl.wrappers.fslmaths.fslmaths method) Bitmap (class in fsl.data.bitmap) BITMAP_DESCRIPTIONS (in module fsl.data.bitmap) BITMAP_EXTENSIONS (in module fsl.data.bitmap) block() (in module fsl.utils.idle) bounds (fsl.data.mesh.Mesh property) bptf() (fsl.wrappers.fslmaths.fslmaths method) brain_model_axis (fsl.data.cifti.DenseCifti property) BrainStructure (class in fsl.data.cifti)

C

Cache (class in fsl.utils.cache) CacheItem (class in fsl.utils.cache) calcExpansion() (in module fsl.data.imagewrapper) calcFaceNormals() (in module fsl.data.mesh) calcRange() (fsl.data.image.Image method) calcVertexNormals() (in module fsl.data.mesh) callback (fsl.utils.notifier._Listener property) callRate (fsl.utils.idle.IdleLoop property) cancelIdle() (fsl.utils.idle.IdleLoop method) canHaveGui (fsl.utils.platform.Platform property) canonicalShape() (in module fsl.data.image) canonicalSliceObj() (in module fsl.data.image) (in module fsl.data.imagewrapper) check_forbidden_characters() (in module fsl.utils.filetree.parse) Cifti (class in fsl.data.cifti) cifti (fsl.data.cifti.BrainStructure property) clear() (fsl.data.volumelabels.VolumeLabels method) (fsl.utils.cache.Cache method) (fsl.utils.settings.Settings method) (in module fsl.utils.settings) clearComponents() (fsl.data.volumelabels.VolumeLabels method) clearLabels() (fsl.data.volumelabels.VolumeLabels method) clearVertexData() (fsl.data.mesh.Mesh method) cluster() (in module fsl.wrappers.cluster_commands) clusterResults() (fsl.data.featimage.FEATImage method) cmd_line_flags (fsl.utils.fslsub.SubmitParams attribute) cmdwrapper() (in module fsl.wrappers.wrapperutils) CoefficientField (class in fsl.transform.nonlinear) coefficientFieldToDeformationField() (in module fsl.transform.nonlinear) collapseExpansions() (in module fsl.data.imagewrapper) commonBase() (in module fsl.utils.path)

compareVersions() (in module fsl.data.dicom) (in module fsl.version) componentsToEigendecomposition() (in module fsl.data.dtifit) componentsToTensor() (in module fsl.data.dtifit) compose() (in module fsl.transform.affine) concat() (in module fsl.transform.affine) concat_bvars() (in module fsl.wrappers.first) concatxfm() (in module fsl.wrappers.flirt) configDir (fsl.utils.settings.Settings property) configID (fsl.utils.settings.Settings property) ConfoundEV (class in fsl.data.featdesign) contains_optionals() (fsl.utils.filetree.utils.Optional method) (fsl.utils.filetree.utils.Part method) contrastNames() (fsl.data.featimage.FEATImage method) contrasts() (fsl.data.featimage.FEATImage method) convertDeformationSpace() (in module fsl.transform.nonlinear) convertDeformationType() (in module fsl.transform.nonlinear) convertwarp() (in module fsl.wrappers.fnirt) coordLabel() (fsl.data.atlases.LabelAtlas method) coordQuery() (in module fsl.scripts.atlasq) coordValues() (fsl.data.atlases.StatisticAtlas method) copy() (fsl.data.image.DataManager method) (fsl.utils.filetree.filetree.FileTree method) CORE_GEOMETRY_DESCRIPTIONS (in module fsl.data.freesurfer) CORE_GEOMETRY_FILES (in module fsl.data.freesurfer) cos() (fsl.wrappers.fslmaths.fslmaths method) coverage() (fsl.data.imagewrapper.ImageWrapper method) covered (fsl.data.imagewrapper.ImageWrapper property) cpval() (fsl.wrappers.fslmaths.fslmaths method) CRC_DCM2NIIX_VERSION (in module fsl.data.dicom) createLock (fsl.utils.idle.MutexFactory attribute)

D

data (fsl.data.bitmap.Bitmap property) (fsl.data.image.Image property) dataIsLoaded (fsl.data.imagewrapper.ImageWrapper property) DataManager (class in fsl.data.image) dataManager (fsl.data.image.Image property) dataRange (fsl.data.image.DataManager property) (fsl.data.image.Image property) (fsl.data.imagewrapper.ImageWrapper property) dataSource (fsl.data.bitmap.Bitmap property) (fsl.data.image.Image property) (fsl.data.mesh.Mesh property) dcm2niix() (in module fsl.data.dicom) decompose() (in module fsl.transform.affine) decomposeTensorMatrix() (in module fsl.data.dtifit) deepest() (in module fsl.utils.path) DEFAULT_TOPIC (in module fsl.utils.notifier) defaultExt() (in module fsl.data.image) defaultOutputType() (in module fsl.data.image) defines() (fsl.utils.filetree.filetree.FileTree method) DeformationField (class in fsl.transform.nonlinear) deformationType (fsl.transform.nonlinear.DeformationField property) delete() (fsl.utils.settings.Settings method) (in module fsl.utils.settings) deleteFile() (fsl.utils.settings.Settings method) (in module fsl.utils.settings)

DenseCifti (class in fsl.data.cifti) deprecated() (in module fsl.utils.deprecated) dequeue() (fsl.utils.idle.TaskThread method) deregister() (fsl.utils.notifier.Notifier method) detectDeformationType() (in module fsl.transform.nonlinear) determineAffine() (fsl.data.image.Nifti static method) determineShape() (fsl.data.image.Nifti static method) dicomDir (fsl.data.dicom.DicomImage property) DicomImage (class in fsl.data.dicom) dilall() (fsl.wrappers.fslmaths.fslmaths method) dilD() (fsl.wrappers.fslmaths.fslmaths method) dilF() (fsl.wrappers.fslmaths.fslmaths method) dilM() (fsl.wrappers.fslmaths.fslmaths method) disable() (fsl.utils.notifier.Notifier method) disableAll() (fsl.utils.notifier.Notifier method) disabled() (in module fsl.utils.assertions) displacements() (fsl.transform.nonlinear.CoefficientField method) div() (fsl.wrappers.fslmaths.fslmaths method) doFlirt() (in module fsl.scripts.fsl_convert_x5) doFnirt() (in module fsl.scripts.fsl_convert_x5) dog_edge() (fsl.wrappers.fslmaths.fslmaths method) DRY_RUN (in module fsl.utils.run) DRY_RUN_COMMANDS (in module fsl.utils.run) dryrun() (in module fsl.utils.run) DTIFitTensor (class in fsl.data.dtifit) dtype (fsl.data.image.Image property)

E

eddy() (in module fsl.wrappers.eddy) eddy_cuda() (in module fsl.wrappers.eddy) edge() (fsl.wrappers.fslmaths.fslmaths method) editable (fsl.data.image.DataManager property) (fsl.data.image.Image property) eigendecompositionToComponents() (in module fsl.data.dtifit) eigendecompositionToTensor() (in module fsl.data.dtifit) email (fsl.utils.fslsub.SubmitParams attribute) enable() (fsl.utils.notifier.Notifier method) enableAll() (fsl.utils.notifier.Notifier method) enabled() (in module fsl.data.dicom) enqueue() (fsl.utils.idle.TaskThread method) ensureIsImage() (in module fsl.utils.ensure) env (fsl.utils.fslsub.SubmitParams attribute) epi_reg() (in module fsl.wrappers.epi_reg) ero() (fsl.wrappers.fslmaths.fslmaths method) eroF() (fsl.wrappers.fslmaths.fslmaths method) EV (class in fsl.data.featdesign) evNames() (fsl.data.featimage.FEATImage method) exp() (fsl.wrappers.fslmaths.fslmaths method)

EXPAND_LIST (in module fsl.wrappers.wrapperutils) expectedShape() (in module fsl.data.image) (in module fsl.data.imagewrapper) expectsArguments (fsl.utils.notifier._Listener property) Expired extension (fsl.data.cifti.DenseCifti property) (fsl.data.cifti.ParcelCifti property) EXTENSION_DESCRIPTIONS (in module fsl.data.gifti) (in module fsl.data.image) (in module fsl.data.mghimage) (in module fsl.data.vtk) EXTRA_GEOMETRY_FILES (in module fsl.data.freesurfer) extra_tree_dirs() (in module fsl.utils.filetree.parse) extract_variables() (fsl.utils.filetree.filetree.FileTree method) (fsl.utils.filetree.utils.Template method) (in module fsl.utils.filetree.utils) exts (in module fsl.scripts.imglob) (in module fsl.scripts.imln) (in module fsl.scripts.imtest) (in module fsl.scripts.remove_ext)

F

fast() (in module fsl.wrappers.fast) feat() (in module fsl.wrappers.feat) FEATFSFDesign (class in fsl.data.featdesign) FEATImage (class in fsl.data.featimage) featquery() (in module fsl.wrappers.feat) fieldToRefMat (fsl.transform.nonlinear.CoefficientField property) fieldType (fsl.transform.nonlinear.CoefficientField property) FILE_GROUPS (in module fsl.data.image) filename (fsl.data.featdesign.VoxelwiseEVMixin property) (fsl.utils.filetree.query.Match property) fileOrArray() (in module fsl.wrappers.wrapperutils) fileOrImage() (in module fsl.wrappers.wrapperutils) fileOrText() (in module fsl.wrappers.wrapperutils) FileOrThing (class in fsl.wrappers.wrapperutils) FileOrThing.Results (class in fsl.wrappers.wrapperutils) filePath() (fsl.utils.settings.Settings method) (in module fsl.utils.settings) FileTree (class in fsl.utils.filetree.filetree) FileTreeQuery (class in fsl.utils.filetree.query) FileType (class in fsl.data.image) fileType() (in module fsl.data.image) fill() (in module fsl.wrappers.tbss) fill_known() (fsl.utils.filetree.utils.Optional method) (fsl.utils.filetree.utils.Part method) (fsl.utils.filetree.utils.Required method) (fsl.utils.filetree.utils.Template method) fillh() (fsl.wrappers.fslmaths.fslmaths method) fillh26() (fsl.wrappers.fslmaths.fslmaths method) find() (fsl.data.atlases.Atlas method) (fsl.data.atlases.AtlasDescription method) find_variables() (in module fsl.utils.filetree.utils) findReferenceImage() (in module fsl.data.freesurfer) (in module fsl.data.vtk) first() (in module fsl.wrappers.first) first_flirt() (in module fsl.wrappers.first) first_utils() (in module fsl.wrappers.first) fit() (fsl.data.featimage.FEATImage method) fixExt() (in module fsl.data.image) fixscaleskew() (in module fsl.wrappers.flirt) flags (fsl.utils.fslsub.SubmitParams attribute) flip() (in module fsl.transform.affine) flirt() (in module fsl.wrappers.flirt) flirtMatrixToSform() (in module fsl.transform.flirt) flirtToX5() (in module fsl.scripts.fsl_convert_x5) floatlist() (in module fsl.scripts.resample_image) fmean() (fsl.wrappers.fslmaths.fslmaths method) fmeanu() (fsl.wrappers.fslmaths.fslmaths method) fmedian() (fsl.wrappers.fslmaths.fslmaths method) fnirt() (in module fsl.wrappers.fnirt) fnirtToX5() (in module fsl.scripts.fsl_convert_x5) FreesurferMesh (class in fsl.data.freesurfer) from_args() (fsl.utils.fslsub.SubmitParams class method) from_cifti() (fsl.data.cifti.Cifti class method) from_gifti() (fsl.data.cifti.BrainStructure class method) (fsl.data.cifti.Cifti class method) from_image() (fsl.data.cifti.Cifti class method) from_string() (fsl.data.cifti.BrainStructure class method) fromFlirt() (in module fsl.transform.flirt) fromFnirt() (in module fsl.transform.fnirt) frozen (fsl.utils.platform.Platform property) FSFError fsl.data module fsl.data.atlases module fsl.data.bitmap module fsl.data.cifti module fsl.data.constants module fsl.data.dicom module fsl.data.dtifit module fsl.data.featanalysis module fsl.data.featdesign module fsl.data.featimage module fsl.data.fixlabels module fsl.data.freesurfer module fsl.data.gifti module fsl.data.image module fsl.data.imagewrapper module fsl.data.melodicanalysis module fsl.data.melodicimage module fsl.data.mesh module fsl.data.mghimage module fsl.data.utils module fsl.data.vest module fsl.data.volumelabels module fsl.data.vtk module fsl.scripts.atlasq module fsl.scripts.fsl_abspath module fsl.scripts.fsl_apply_x5 module fsl.scripts.fsl_convert_x5 module fsl.scripts.fsl_ents module fsl.scripts.imcp module fsl.scripts.imglob module fsl.scripts.imln module fsl.scripts.immv module fsl.scripts.imrm module fsl.scripts.imtest module fsl.scripts.remove_ext module fsl.scripts.resample_image module fsl.scripts.Text2Vest module fsl.scripts.Vest2Text module fsl.transform module fsl.transform.affine module fsl.transform.flirt module

fsl.transform.fnirt module fsl.transform.nonlinear module fsl.transform.x5 module fsl.utils module fsl.utils.assertions module fsl.utils.bids module fsl.utils.cache module fsl.utils.deprecated module fsl.utils.ensure module fsl.utils.filetree module fsl.utils.filetree.filetree module fsl.utils.filetree.parse module fsl.utils.filetree.query module fsl.utils.filetree.utils module fsl.utils.fslsub module fsl.utils.idle module fsl.utils.image module fsl.utils.image.resample module fsl.utils.image.roi module fsl.utils.imcp module fsl.utils.memoize module fsl.utils.meta module fsl.utils.naninfrange module fsl.utils.notifier module fsl.utils.parse_data module fsl.utils.path module fsl.utils.platform module fsl.utils.run module fsl.utils.settings module fsl.utils.tempdir module fsl.utils.weakfuncref module fsl.version module fsl.wrappers module fsl.wrappers.avwutils module fsl.wrappers.bedpostx module fsl.wrappers.bet module fsl.wrappers.bianca module fsl.wrappers.cluster_commands module fsl.wrappers.dtifit module fsl.wrappers.eddy module fsl.wrappers.epi_reg module fsl.wrappers.fast module fsl.wrappers.feat module fsl.wrappers.first module fsl.wrappers.flirt module fsl.wrappers.fnirt module fsl.wrappers.fsl_anat module fsl.wrappers.fsl_sub module fsl.wrappers.fslmaths module fsl.wrappers.fslstats module fsl.wrappers.fugue module fsl.wrappers.melodic module fsl.wrappers.misc module fsl.wrappers.oxford_asl module fsl.wrappers.randomise module fsl.wrappers.tbss module fsl.wrappers.wrapperutils module fsl_anat() (in module fsl.wrappers.fsl_anat) fsl_glm() (in module fsl.wrappers.melodic) FSL_PREFIX (in module fsl.utils.run) fsl_prepare_fieldmap() (in module fsl.wrappers.fugue) fsl_regfilt() (in module fsl.wrappers.melodic) fsl_sub() (in module fsl.wrappers.fsl_sub) fslcpgeom() (in module fsl.wrappers.avwutils) fsldevdir (fsl.utils.platform.Platform property) fsldir (fsl.utils.platform.Platform property) fslmaths (class in fsl.wrappers.fslmaths) fslmerge() (in module fsl.wrappers.avwutils) FSLNotPresent fslorient() (in module fsl.wrappers.misc) fslreorient2std() (in module fsl.wrappers.misc) fslroi() (in module fsl.wrappers.misc) fslselectvols() (in module fsl.wrappers.avwutils) fslsplit() (in module fsl.wrappers.avwutils) fslstats (class in fsl.wrappers.fslstats) fslswapdim() (in module fsl.wrappers.misc) fslVersion (fsl.utils.platform.Platform property) fslwrapper() (in module fsl.wrappers.wrapperutils) fslwsl (fsl.utils.platform.Platform property) ftests() (fsl.data.featimage.FEATImage method) fugue() (in module fsl.wrappers.fugue) full_name (fsl.utils.filetree.query.Match property) func_to_cmd() (in module fsl.utils.fslsub) (in module fsl.utils.run) function() (fsl.utils.weakfuncref.WeakFunctionRef method) funcwrapper() (in module fsl.wrappers.wrapperutils)

G

genComponentIndexList() (in module fsl.scripts.fsl_ents) generateAffines() (fsl.data.image.Nifti static method) generateVest() (in module fsl.data.vest) genxwrapper() (in module fsl.wrappers.wrapperutils) get() (fsl.data.atlases.LabelAtlas method) (fsl.data.atlases.StatisticAtlas method) (fsl.utils.cache.Cache method) (fsl.utils.filetree.filetree.FileTree method) get_all() (fsl.utils.filetree.filetree.FileTree method) (fsl.utils.filetree.utils.Template method) (in module fsl.utils.filetree.utils) get_all_trees() (fsl.utils.filetree.filetree.FileTree method) get_all_vars() (fsl.utils.filetree.filetree.FileTree method) get_registered() (in module fsl.utils.filetree.filetree) get_template() (fsl.utils.filetree.filetree.FileTree method) get_variable() (fsl.utils.filetree.filetree.FileTree method) getAffine() (fsl.data.image.Nifti method) getAllLabels() (fsl.data.volumelabels.VolumeLabels method) getAnalysisDir() (in module fsl.data.featanalysis) (in module fsl.data.melodicanalysis) getAnalysisName() (fsl.data.featimage.FEATImage method) getAtlasDescription() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) getClusterMask() (fsl.data.featimage.FEATImage method) getClusterMaskFile() (in module fsl.data.featanalysis) getComponentPowerSpectra() (in module fsl.data.melodicanalysis) getComponentPowerSpectrum() (fsl.data.melodicimage.MelodicImage method) getComponents() (fsl.data.volumelabels.VolumeLabels method) getComponentTimeSeries() (fsl.data.melodicimage.MelodicImage method) (in module fsl.data.melodicanalysis) getCOPE() (fsl.data.featimage.FEATImage method) getCOPEFile() (in module fsl.data.featanalysis) getData() (fsl.data.featdesign.VoxelwiseEVMixin method) getDataFile() (fsl.data.melodicimage.MelodicImage method) (in module fsl.data.featanalysis) (in module fsl.data.melodicanalysis) getDesign() (fsl.data.featdesign.FEATFSFDesign method) (fsl.data.featimage.FEATImage method) getDisplayLabel() (fsl.data.volumelabels.VolumeLabels method) getDTIFitDataPrefix() (in module fsl.data.dtifit) getEVs() (fsl.data.featdesign.FEATFSFDesign method) getExt() (in module fsl.data.image) (in module fsl.utils.path) getFClusterMask() (fsl.data.featimage.FEATImage method) getFClusterMaskFile() (in module fsl.data.featanalysis) getFEATDir() (fsl.data.featimage.FEATImage method) getFileGroup() (in module fsl.utils.path)

getFirstLevelEVs() (in module fsl.data.featdesign) getFIRSTPrefix() (in module fsl.data.vtk) getFTMixFile() (in module fsl.data.melodicanalysis) getHigherLevelEVs() (in module fsl.data.featdesign) getICFile() (in module fsl.data.melodicanalysis) getImageWrapper() (fsl.data.image.Image method) getLabels() (fsl.data.volumelabels.VolumeLabels method) getMeanFile() (fsl.data.melodicimage.MelodicImage method) (in module fsl.data.melodicanalysis) getMelodicDir() (fsl.data.melodicimage.MelodicImage method) getMelodicFile() (in module fsl.data.featanalysis) getMeta() (fsl.utils.meta.Meta method) getMixFile() (in module fsl.data.melodicanalysis) getNumComponents() (in module fsl.data.melodicanalysis) getOrientation() (fsl.data.image.Nifti method) getPE() (fsl.data.featimage.FEATImage method) getPEFile() (in module fsl.data.featanalysis) getReportFile() (fsl.data.featimage.FEATImage method) (fsl.data.melodicimage.MelodicImage method) (in module fsl.data.featanalysis) (in module fsl.data.melodicanalysis) getResidualFile() (in module fsl.data.featanalysis) getResiduals() (fsl.data.featimage.FEATImage method) getTaskThread() (fsl.data.imagewrapper.ImageWrapper method) getThresholds() (in module fsl.data.featanalysis) getTopLevelAnalysisDir() (fsl.data.featimage.FEATImage method) (fsl.data.melodicimage.MelodicImage method) (in module fsl.data.featanalysis) (in module fsl.data.melodicanalysis) getVertexData() (fsl.data.mesh.Mesh method) getVertexDataColourTable() (fsl.data.freesurfer.FreesurferMesh method) getXFormCode() (fsl.data.image.Nifti method) getZFStatFile() (in module fsl.data.featanalysis) getZFStats() (fsl.data.featimage.FEATImage method) getZStatFile() (in module fsl.data.featanalysis) getZStats() (fsl.data.featimage.FEATImage method) gifti (fsl.data.cifti.BrainStructure property) GiftiMesh (class in fsl.data.gifti) glIsSoftwareRenderer (fsl.utils.platform.Platform property) glRenderer (fsl.utils.platform.Platform property) glVersion (fsl.utils.platform.Platform property) gps() (in module fsl.wrappers.misc) grid() (fsl.wrappers.fslmaths.fslmaths method) groups (in module fsl.scripts.imglob) (in module fsl.scripts.imln) (in module fsl.scripts.imtest) guessType() (in module fsl.data.utils)

H

hasAtlas() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) hasComponent() (fsl.data.volumelabels.VolumeLabels method) hasExt() (in module fsl.utils.path) hasLabel() (fsl.data.volumelabels.VolumeLabels method) hasMelodicDir() (in module fsl.data.featanalysis) hasStats() (fsl.data.featimage.FEATImage method) (in module fsl.data.featanalysis)

haveGui (fsl.utils.platform.Platform property) header (fsl.data.image.Nifti property) HelpFormatter (class in fsl.scripts.atlasq) HIDE_IF_TRUE (in module fsl.wrappers.wrapperutils) hold() (in module fsl.utils.fslsub) (in module fsl.utils.run)

I

identifyAffine() (fsl.data.image.Nifti static method) identifyAtlas() (in module fsl.scripts.atlasq) IdentifyError idle() (fsl.utils.idle.IdleLoop method) (in module fsl.utils.idle) IdleLoop (class in fsl.utils.idle) idleLoop (in module fsl.utils.idle) IdleTask (class in fsl.utils.idle) idleWhen() (fsl.utils.idle.IdleLoop method) (in module fsl.utils.idle) Image (class in fsl.data.image) image (fsl.data.featdesign.VoxelwiseEVMixin property) Image() (in module fsl.utils.parse_data) ImageOut() (in module fsl.utils.parse_data) ImageWrapper (class in fsl.data.imagewrapper) imcp() (in module fsl.utils.imcp) imglob() (in module fsl.scripts.imglob) immv() (in module fsl.utils.imcp) imtest() (in module fsl.scripts.imtest) inBIDSDir() (in module fsl.utils.bids) IncompatibleVerticesError index() (fsl.wrappers.fslmaths.fslmaths method) indices (fsl.data.mesh.Mesh property) inferType() (in module fsl.transform.x5) info() (in module fsl.utils.fslsub) ing() (fsl.wrappers.fslmaths.fslmaths method) inIdle() (fsl.utils.idle.IdleLoop method) initialise() (in module fsl.utils.settings) inm() (fsl.wrappers.fslmaths.fslmaths method)

inMemory (fsl.data.image.Image property) inSSHSession (fsl.utils.platform.Platform property) Instanceify (class in fsl.utils.memoize) intent (fsl.data.image.Nifti property) intlist() (in module fsl.scripts.resample_image) invalidate() (fsl.utils.memoize.Memoize method) InvalidLabelFileError invert() (in module fsl.transform.affine) inVNCSession (fsl.utils.platform.Platform property) invwarp() (in module fsl.wrappers.fnirt) invxfm() (in module fsl.wrappers.flirt) isAllEnabled() (fsl.utils.notifier.Notifier method) isBIDSDir() (in module fsl.utils.bids) isBIDSFile() (in module fsl.utils.bids) iscomplex (fsl.data.image.Image property) isDTIFitPath() (in module fsl.data.dtifit) isEnabled() (fsl.utils.notifier.Notifier method) isFEATDir() (in module fsl.data.featanalysis) isFEATImage() (in module fsl.data.featanalysis) isFirstLevelAnalysis() (fsl.data.featimage.FEATImage method) (in module fsl.data.featanalysis) isMelodicDir() (in module fsl.data.melodicanalysis) isMelodicImage() (in module fsl.data.melodicanalysis) isNeurological() (fsl.data.image.Nifti method) isNoisyComponent() (in module fsl.data.fixlabels) isQueued() (fsl.utils.idle.TaskThread method) isValidFancySliceObj() (in module fsl.data.image) (in module fsl.data.imagewrapper) items() (fsl.utils.cache.Cache method)

J

job_name (fsl.utils.fslsub.SubmitParams attribute)

job_output() (in module fsl.utils.run)

K

kernel() (fsl.wrappers.fslmaths.fslmaths method)

keys() (fsl.utils.cache.Cache method) knotSpacing (fsl.transform.nonlinear.CoefficientField property)

L

L1() (fsl.data.dtifit.DTIFitTensor method) L2() (fsl.data.dtifit.DTIFitTensor method) L3() (fsl.data.dtifit.DTIFitTensor method) label() (fsl.data.atlases.LabelAtlas method) LabelAtlas (class in fsl.data.atlases) labelNames() (in module fsl.scripts.atlasq) list_all_trees() (in module fsl.utils.filetree.parse) listAtlases() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) (in module fsl.scripts.atlasq) listFiles() (fsl.utils.settings.Settings method) (in module fsl.utils.settings) Literal (class in fsl.utils.filetree.utils) LOAD (in module fsl.wrappers.wrapperutils) load() (fsl.data.volumelabels.VolumeLabels method) (in module fsl.data.cifti) load_json() (fsl.utils.filetree.filetree.FileTree class method) load_pickle() (fsl.utils.filetree.filetree.FileTree class method) loadAtlas() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) loadClusterResults() (in module fsl.data.featanalysis) loadConfoundFiles() (in module fsl.scripts.fsl_ents) loadContrasts() (in module fsl.data.featanalysis) loadData() (fsl.data.image.Image method) (fsl.data.imagewrapper.ImageWrapper method) loadDesign() (in module fsl.data.featanalysis)

loadDesignMat() (in module fsl.data.featdesign) loadFEATDesignFile() (in module fsl.data.featanalysis) loadFsf() (in module fsl.data.featanalysis) loadFTests() (in module fsl.data.featanalysis) loadGiftiMesh() (in module fsl.data.gifti) loadGiftiVertexData() (in module fsl.data.gifti) loadLabelFile() (in module fsl.data.fixlabels) loadMetadata() (in module fsl.data.image) (in module fsl.utils.bids) loadSeries() (in module fsl.data.dicom) loadSettings() (in module fsl.data.featanalysis) loadVertexData() (fsl.data.freesurfer.FreesurferMesh method) (fsl.data.gifti.GiftiMesh method) (fsl.data.mesh.Mesh method) loadVertexDataFile() (in module fsl.data.freesurfer) loadVertices() (fsl.data.freesurfer.FreesurferMesh method) (fsl.data.gifti.GiftiMesh method) (fsl.data.mesh.Mesh method) loadVestFile() (in module fsl.data.vest) loadVestLutFile() (in module fsl.data.vest) loadVTKPolydataFile() (in module fsl.data.vtk) log() (fsl.wrappers.fslmaths.fslmaths method) logdir (fsl.utils.fslsub.SubmitParams attribute) looksLikeImage() (in module fsl.data.image) looksLikeTensorImage() (in module fsl.data.dtifit) looksLikeVestLutFile() (in module fsl.data.vest)

M

mail_options (fsl.utils.fslsub.SubmitParams attribute) main() (in module fsl.scripts.atlasq) (in module fsl.scripts.fsl_abspath) (in module fsl.scripts.fsl_apply_x5) (in module fsl.scripts.fsl_convert_x5) (in module fsl.scripts.fsl_ents) (in module fsl.scripts.imcp) (in module fsl.scripts.imglob) (in module fsl.scripts.imln) (in module fsl.scripts.immv) (in module fsl.scripts.imrm) (in module fsl.scripts.imtest) (in module fsl.scripts.remove_ext) (in module fsl.scripts.resample_image) (in module fsl.scripts.Text2Vest) (in module fsl.scripts.Vest2Text) make_bianca_mask() (in module fsl.wrappers.bianca) makerot() (in module fsl.wrappers.flirt) makeWriteable() (in module fsl.data.utils) mapIndices() (fsl.data.image.Nifti method) mas() (fsl.wrappers.fslmaths.fslmaths method) MaskError maskLabel() (fsl.data.atlases.LabelAtlas method) maskQuery() (in module fsl.scripts.atlasq) maskValues() (fsl.data.atlases.StatisticAtlas method) Match (class in fsl.utils.filetree.query) match() (fsl.utils.bids.BIDSFile method) max() (fsl.wrappers.fslmaths.fslmaths method) mcflirt() (in module fsl.wrappers.flirt) melodic() (in module fsl.wrappers.melodic) MelodicImage (class in fsl.data.melodicimage) Memoize (class in fsl.utils.memoize) memoize() (in module fsl.utils.memoize) memoizeMD5() (in module fsl.utils.memoize) mergeBounds() (in module fsl.transform.affine) Mesh (class in fsl.data.mesh) Mesh() (in module fsl.utils.parse_data) Meta (class in fsl.utils.meta) meta (fsl.utils.meta.Meta property) metaItems() (fsl.utils.meta.Meta method) metaKeys() (fsl.utils.meta.Meta method) metaValues() (fsl.utils.meta.Meta method) MGHImage (class in fsl.data.mghimage) mghImageFile (fsl.data.mghimage.MGHImage property) midtrans() (in module fsl.wrappers.flirt) min() (fsl.wrappers.fslmaths.fslmaths method) MIN_DCM2NIIX_VERSION (in module fsl.data.dicom) minutes (fsl.utils.fslsub.SubmitParams attribute) MissingVariable modelFit() (in module fsl.data.featimage) module fsl.data fsl.data.atlases fsl.data.bitmap fsl.data.cifti fsl.data.constants fsl.data.dicom fsl.data.dtifit fsl.data.featanalysis fsl.data.featdesign fsl.data.featimage fsl.data.fixlabels fsl.data.freesurfer fsl.data.gifti fsl.data.image fsl.data.imagewrapper fsl.data.melodicanalysis fsl.data.melodicimage fsl.data.mesh fsl.data.mghimage fsl.data.utils fsl.data.vest fsl.data.volumelabels fsl.data.vtk fsl.scripts.atlasq fsl.scripts.fsl_abspath fsl.scripts.fsl_apply_x5 fsl.scripts.fsl_convert_x5 fsl.scripts.fsl_ents fsl.scripts.imcp fsl.scripts.imglob fsl.scripts.imln fsl.scripts.immv fsl.scripts.imrm fsl.scripts.imtest fsl.scripts.remove_ext fsl.scripts.resample_image fsl.scripts.Text2Vest fsl.scripts.Vest2Text fsl.transform fsl.transform.affine fsl.transform.flirt fsl.transform.fnirt fsl.transform.nonlinear fsl.transform.x5 fsl.utils fsl.utils.assertions fsl.utils.bids fsl.utils.cache fsl.utils.deprecated fsl.utils.ensure fsl.utils.filetree fsl.utils.filetree.filetree fsl.utils.filetree.parse fsl.utils.filetree.query fsl.utils.filetree.utils fsl.utils.fslsub fsl.utils.idle fsl.utils.image fsl.utils.image.resample fsl.utils.image.roi fsl.utils.imcp fsl.utils.memoize fsl.utils.meta fsl.utils.naninfrange fsl.utils.notifier fsl.utils.parse_data fsl.utils.path fsl.utils.platform fsl.utils.run fsl.utils.settings fsl.utils.tempdir fsl.utils.weakfuncref fsl.version fsl.wrappers fsl.wrappers.avwutils fsl.wrappers.bedpostx fsl.wrappers.bet fsl.wrappers.bianca fsl.wrappers.cluster_commands fsl.wrappers.dtifit fsl.wrappers.eddy fsl.wrappers.epi_reg fsl.wrappers.fast fsl.wrappers.feat fsl.wrappers.first fsl.wrappers.flirt fsl.wrappers.fnirt fsl.wrappers.fsl_anat fsl.wrappers.fsl_sub fsl.wrappers.fslmaths fsl.wrappers.fslstats fsl.wrappers.fugue fsl.wrappers.melodic fsl.wrappers.misc fsl.wrappers.oxford_asl fsl.wrappers.randomise fsl.wrappers.tbss fsl.wrappers.wrapperutils

MotionParameterEV (class in fsl.data.featdesign) mul() (fsl.wrappers.fslmaths.fslmaths method) multi_threaded (fsl.utils.fslsub.SubmitParams attribute) mutex() (in module fsl.utils.idle) MutexFactory (class in fsl.utils.idle)

N

name (fsl.data.bitmap.Bitmap property) (fsl.data.mesh.Mesh property) (fsl.utils.filetree.filetree.FileTree property) namedPositionals() (in module fsl.wrappers.wrapperutils) nan() (fsl.wrappers.fslmaths.fslmaths method) naninfrange() (in module fsl.utils.naninfrange) nanm() (fsl.wrappers.fslmaths.fslmaths method) ndim (fsl.data.image.Nifti property) nearestVertex() (fsl.data.mesh.Mesh method) needsFixing() (in module fsl.data.mesh) neverQueue (fsl.utils.idle.IdleLoop property) nibImage (fsl.data.image.Image property) Nifti (class in fsl.data.image) NIFTI (fsl.data.image.FileType attribute) NIFTI2 (fsl.data.image.FileType attribute) NIFTI2_GZ (fsl.data.image.FileType attribute) NIFTI2_PAIR (fsl.data.image.FileType attribute) NIFTI2_PAIR_GZ (fsl.data.image.FileType attribute) NIFTI_GZ (fsl.data.image.FileType attribute) NIFTI_PAIR (fsl.data.image.FileType attribute) NIFTI_PAIR_GZ (fsl.data.image.FileType attribute) NIFTI_XFORM_ALIGNED_ANAT (in module fsl.data.constants) NIFTI_XFORM_ANALYZE (in module fsl.data.constants)

NIFTI_XFORM_MNI_152 (in module fsl.data.constants) NIFTI_XFORM_SCANNER_ANAT (in module fsl.data.constants) NIFTI_XFORM_TALAIRACH (in module fsl.data.constants) NIFTI_XFORM_TEMPLATE_OTHER (in module fsl.data.constants) NIFTI_XFORM_UNKNOWN (in module fsl.data.constants) niftiDataType (fsl.data.image.Nifti property) niftiDataTypeSize (fsl.data.image.Nifti property) niftiVersion (fsl.data.image.Nifti property) non_FA() (in module fsl.wrappers.tbss) NonLinearTransform (class in fsl.transform.nonlinear) NormalEV (class in fsl.data.featdesign) normalise() (in module fsl.transform.affine) normals (fsl.data.mesh.Mesh property) Notifier (class in fsl.utils.notifier) notify() (fsl.utils.notifier.Notifier method) numComponents() (fsl.data.melodicimage.MelodicImage method) (fsl.data.volumelabels.VolumeLabels method) numContrasts() (fsl.data.featimage.FEATImage method) numEVs() (fsl.data.featimage.FEATImage method) numFTests() (fsl.data.featimage.FEATImage method) numPoints() (fsl.data.featimage.FEATImage method) nvals (fsl.data.image.Image property) nvertices (fsl.data.mesh.Mesh property)

O

ohi() (in module fsl.scripts.atlasq) on_disk() (fsl.utils.filetree.filetree.FileTree method) Optional (class in fsl.utils.filetree.utils) optional_subsets() (fsl.utils.filetree.utils.Template method) optional_variables() (fsl.utils.filetree.utils.Optional method) (fsl.utils.filetree.utils.Part method) (fsl.utils.filetree.utils.Template method) (in module fsl.utils.filetree.utils) OPTIONS (fsl.wrappers.fslstats.fslstats attribute) ordered_variables() (fsl.utils.filetree.utils.Template method) ORIENT_A2P (in module fsl.data.constants)

ORIENT_I2S (in module fsl.data.constants) ORIENT_L2R (in module fsl.data.constants) ORIENT_P2A (in module fsl.data.constants) ORIENT_R2L (in module fsl.data.constants) ORIENT_S2I (in module fsl.data.constants) ORIENT_UNKNOWN (in module fsl.data.constants) os (fsl.utils.platform.Platform property) output() (in module fsl.utils.fslsub) OVERLAP_ALL (in module fsl.data.imagewrapper) OVERLAP_NONE (in module fsl.data.imagewrapper) OVERLAP_SOME (in module fsl.data.imagewrapper) oxford_asl() (in module fsl.wrappers.oxford_asl)

P

parcel_axis (fsl.data.cifti.ParcelCifti property) ParcelCifti (class in fsl.data.cifti) parent (fsl.utils.filetree.filetree.FileTree property) parse() (fsl.utils.filetree.utils.Template class method) parseArgs() (in module fsl.scripts.atlasq) (in module fsl.scripts.fsl_apply_x5) (in module fsl.scripts.fsl_convert_x5) (in module fsl.scripts.fsl_ents) (in module fsl.scripts.resample_image) parseFilename() (in module fsl.utils.bids) parseVersionString() (in module fsl.version) Part (class in fsl.utils.filetree.utils) partial_fill() (fsl.utils.filetree.filetree.FileTree method) partialFit() (fsl.data.featimage.FEATImage method) patchVersion() (in module fsl.version) PathError, [1] pixdim (fsl.data.image.Nifti property) planeIntersection() (fsl.data.mesh.Mesh method) Platform (class in fsl.utils.platform)

platform (in module fsl.utils.platform) postreg() (in module fsl.wrappers.tbss) prelude() (in module fsl.wrappers.fugue) prepareArgs() (in module fsl.utils.run) prepareGiftiVertexData() (in module fsl.data.gifti) prepareMask() (fsl.data.atlases.Atlas method) preproc() (in module fsl.wrappers.tbss) prestats() (in module fsl.wrappers.tbss) printColumns() (in module fsl.scripts.atlasq) priority (fsl.utils.fslsub.SubmitParams attribute) ProbabilisticAtlas (class in fsl.data.atlases) probtrackx() (in module fsl.wrappers.bedpostx) probtrackx2() (in module fsl.wrappers.bedpostx) probtrackx2_gpu() (in module fsl.wrappers.bedpostx) PROBTRACKX2_VALMAP (in module fsl.wrappers.bedpostx) ptoz() (fsl.wrappers.fslmaths.fslmaths method) put() (fsl.utils.cache.Cache method) pval() (fsl.wrappers.fslmaths.fslmaths method) pval0() (fsl.wrappers.fslmaths.fslmaths method)

Q

query() (fsl.utils.filetree.query.FileTreeQuery method) queryAtlas() (in module fsl.scripts.atlasq) queryLongOutput() (in module fsl.scripts.atlasq)

queryShortOutput() (in module fsl.scripts.atlasq) queue (fsl.utils.fslsub.SubmitParams attribute) (fsl.utils.idle.IdleLoop property) queueDict (fsl.utils.idle.IdleLoop property)

R

ram (fsl.utils.fslsub.SubmitParams attribute) rand() (fsl.wrappers.fslmaths.fslmaths method) randn() (fsl.wrappers.fslmaths.fslmaths method) randomise() (in module fsl.wrappers.randomise) range() (fsl.wrappers.fslmaths.fslmaths method) rank() (fsl.wrappers.fslmaths.fslmaths method) ranknorm() (fsl.wrappers.fslmaths.fslmaths method) rayIntersection() (fsl.data.mesh.Mesh method) read() (fsl.utils.filetree.filetree.FileTree class method) (fsl.utils.settings.Settings method) (in module fsl.utils.settings) read_line() (in module fsl.utils.filetree.parse) read_subtree_line() (in module fsl.utils.filetree.parse) readAll() (fsl.utils.settings.Settings method) (in module fsl.utils.settings) readFile() (fsl.utils.settings.Settings method) (in module fsl.utils.settings) readFlirt() (in module fsl.transform.flirt) readFnirt() (in module fsl.transform.fnirt) readLinearX5() (in module fsl.transform.x5) readNonLinearX5() (in module fsl.transform.x5) realShape (fsl.data.image.Nifti property) recip() (fsl.wrappers.fslmaths.fslmaths method) ref (fsl.transform.nonlinear.NonLinearTransform property) refSpace (fsl.transform.nonlinear.NonLinearTransform property) refToFieldMat (fsl.transform.nonlinear.CoefficientField property) refToSrcMat (fsl.transform.nonlinear.CoefficientField property) reg() (in module fsl.wrappers.tbss) register() (fsl.utils.notifier.Notifier method) register_tree() (in module fsl.utils.filetree.filetree) Registered registered (fsl.utils.idle.IdleLoop property) relatedFiles() (in module fsl.data.gifti) relatedGeometryFiles() (in module fsl.data.freesurfer) relatedVertexDataFiles() (in module fsl.data.freesurfer) relative (fsl.transform.nonlinear.DeformationField property) rem() (fsl.wrappers.fslmaths.fslmaths method) remove_optionals() (fsl.utils.filetree.utils.Template method)

removeAtlas() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) removeComponent() (fsl.data.volumelabels.VolumeLabels method) removeDuplicates() (in module fsl.utils.path) removeExt() (in module fsl.data.image) (in module fsl.utils.path) removeLabel() (fsl.data.volumelabels.VolumeLabels method) Required (class in fsl.utils.filetree.utils) required_variables() (fsl.utils.filetree.utils.Part method) (fsl.utils.filetree.utils.Required method) (fsl.utils.filetree.utils.Template method) resample() (in module fsl.utils.image.resample) resampleToPixdims() (in module fsl.utils.image.resample) resampleToReference() (in module fsl.utils.image.resample) rescale() (in module fsl.transform.affine) rescanAtlases() (fsl.data.atlases.AtlasRegistry method) (in module fsl.data.atlases) reset() (fsl.data.imagewrapper.ImageWrapper method) (fsl.utils.idle.IdleLoop method) resetWarningCache() (in module fsl.utils.deprecated) resolve() (fsl.utils.filetree.utils.Template method) (in module fsl.utils.filetree.utils) restart() (fsl.wrappers.fslmaths.fslmaths method) rmsdev() (in module fsl.transform.affine) robustfov() (in module fsl.wrappers.bet) roi() (fsl.wrappers.fslmaths.fslmaths method) (in module fsl.utils.image.roi) rotMatToAffine() (in module fsl.transform.affine) rotMatToAxisAngles() (in module fsl.transform.affine) run() (fsl.utils.idle.TaskThread method) (fsl.wrappers.fslmaths.fslmaths method) (fsl.wrappers.fslstats.fslstats method) (in module fsl.utils.idle) (in module fsl.utils.run) run_first() (in module fsl.wrappers.first) run_first_all() (in module fsl.wrappers.first) runfsl() (in module fsl.utils.run) runfunc() (in module fsl.utils.run)

S

s() (fsl.wrappers.fslmaths.fslmaths method) sameSpace() (fsl.data.image.Nifti method) sanitiseList() (in module fsl.scripts.resample_image) save() (fsl.data.cifti.Cifti method) (fsl.data.image.Image method) (fsl.data.mghimage.MGHImage method) (fsl.data.volumelabels.VolumeLabels method) (fsl.wrappers.fslmaths.fslmaths method) save_json() (fsl.utils.filetree.filetree.FileTree method) save_pickle() (fsl.utils.filetree.filetree.FileTree method) saveLabelFile() (in module fsl.data.fixlabels) saveState (fsl.data.image.Image property) scaledVoxToVoxMat (fsl.data.image.Nifti property) scaleOffsetXform() (in module fsl.transform.affine) scan() (in module fsl.utils.filetree.query) scanDir() (in module fsl.data.dicom) search_tree() (in module fsl.utils.filetree.parse) seed() (fsl.wrappers.fslmaths.fslmaths method) selectedVertices() (fsl.data.mesh.Mesh method) seriesCRC() (in module fsl.data.dicom) set() (in module fsl.utils.settings) setMeta() (fsl.utils.meta.Meta method) Settings (class in fsl.utils.settings) sformToFlirtMatrix() (in module fsl.transform.flirt) shallowest() (in module fsl.utils.path) shape (fsl.data.bitmap.Bitmap property) (fsl.data.image.Nifti property) (fsl.data.imagewrapper.ImageWrapper property) SHOW_IF_TRUE (in module fsl.wrappers.wrapperutils) sigloss() (in module fsl.wrappers.fugue) sin() (fsl.wrappers.fslmaths.fslmaths method) skip() (fsl.utils.notifier.Notifier method)

skipAll() (fsl.utils.notifier.Notifier method) skipUnchanged() (in module fsl.utils.memoize) sliceCovered() (in module fsl.data.imagewrapper) sliceObjToSliceTuple() (in module fsl.data.imagewrapper) sliceOverlap() (in module fsl.data.imagewrapper) slicer() (in module fsl.wrappers.misc) sliceTupleToSliceObj() (in module fsl.data.imagewrapper) smooth() (fsl.wrappers.fslmaths.fslmaths method) smoothest() (in module fsl.wrappers.cluster_commands) split_parts_gpu() (in module fsl.wrappers.bedpostx) splitExt() (in module fsl.data.image) (in module fsl.utils.path) sqr() (fsl.wrappers.fslmaths.fslmaths method) sqrt() (fsl.wrappers.fslmaths.fslmaths method) src (fsl.transform.nonlinear.NonLinearTransform property) srcSpace (fsl.transform.nonlinear.NonLinearTransform property) srcToRefMat (fsl.transform.nonlinear.CoefficientField property) standard_space_roi() (in module fsl.wrappers.flirt) StatisticAtlas (class in fsl.data.atlases) stdout (fsl.wrappers.wrapperutils.FileOrThing.Results property) stop() (fsl.utils.idle.TaskThread method) strval() (fsl.data.image.Nifti method) sub() (fsl.wrappers.fslmaths.fslmaths method) submit() (in module fsl.utils.fslsub) SubmitParams (class in fsl.utils.fslsub) subsamp2() (fsl.wrappers.fslmaths.fslmaths method) subsamp2offc() (fsl.wrappers.fslmaths.fslmaths method) summariseAtlas() (in module fsl.scripts.atlasq) surface() (fsl.data.cifti.DenseCifti method) (fsl.data.cifti.ParcelCifti method) surfToVoxMat (fsl.data.mghimage.MGHImage property) surfToWorldMat (fsl.data.mghimage.MGHImage property) synchronous() (fsl.utils.idle.IdleLoop method)

T

tan() (fsl.wrappers.fslmaths.fslmaths method) Tar1() (fsl.wrappers.fslmaths.fslmaths method) Task (class in fsl.utils.idle) TaskThread (class in fsl.utils.idle) TaskThreadVeto tempdir() (in module fsl.utils.tempdir) Template (class in fsl.utils.filetree.utils) template (fsl.utils.filetree.query.Match property) template_variables() (fsl.utils.filetree.filetree.FileTree method) templates (fsl.utils.filetree.query.FileTreeQuery property) TemporalDerivativeEV (class in fsl.data.featdesign) tensor_decomp() (fsl.wrappers.fslmaths.fslmaths method) tensorToComponents() (in module fsl.data.dtifit) tensorToEigendecomposition() (in module fsl.data.dtifit) tfce() (fsl.wrappers.fslmaths.fslmaths method) tfceS() (fsl.wrappers.fslmaths.fslmaths method) thr() (fsl.wrappers.fslmaths.fslmaths method) thresholds() (fsl.data.featimage.FEATImage method) thrP() (fsl.wrappers.fslmaths.fslmaths method) thrp() (fsl.wrappers.fslmaths.fslmaths method) timer (fsl.utils.idle.IdleLoop property) timeUnits (fsl.data.image.Nifti property)

Tmax() (fsl.wrappers.fslmaths.fslmaths method) Tmaxn() (fsl.wrappers.fslmaths.fslmaths method) Tmean() (fsl.wrappers.fslmaths.fslmaths method) Tmedian() (fsl.wrappers.fslmaths.fslmaths method) Tmin() (fsl.wrappers.fslmaths.fslmaths method) to_cifti() (fsl.data.cifti.Cifti method) to_image() (fsl.data.cifti.DenseCifti method) (fsl.data.cifti.ParcelCifti method) toFlirt() (in module fsl.transform.flirt) toFnirt() (in module fsl.transform.fnirt) topup() (in module fsl.wrappers.eddy) Tperc() (fsl.wrappers.fslmaths.fslmaths method) tr (fsl.data.melodicimage.MelodicImage property) transform() (fsl.transform.nonlinear.CoefficientField method) (fsl.transform.nonlinear.DeformationField method) (fsl.transform.nonlinear.NonLinearTransform method) (in module fsl.transform.affine) transformNormal() (in module fsl.transform.affine) tree (fsl.utils.filetree.query.FileTreeQuery property) (fsl.utils.filetree.query.Match property) trimesh (fsl.data.mesh.Mesh property) Tstd() (fsl.wrappers.fslmaths.fslmaths method)

U

uniquePrefix() (in module fsl.utils.path) update() (fsl.utils.filetree.filetree.FileTree method) (fsl.utils.fslsub.SubmitParams method) updateMeta() (fsl.utils.meta.Meta method)

use() (in module fsl.utils.settings) uthr() (fsl.wrappers.fslmaths.fslmaths method) uthrP() (fsl.wrappers.fslmaths.fslmaths method) uthrp() (fsl.wrappers.fslmaths.fslmaths method)

V

V1() (fsl.data.dtifit.DTIFitTensor method) V2() (fsl.data.dtifit.DTIFitTensor method) V3() (fsl.data.dtifit.DTIFitTensor method) values() (fsl.data.atlases.StatisticAtlas method) (fsl.utils.cache.Cache method) variables (fsl.utils.filetree.query.Match property) variables() (fsl.utils.filetree.query.FileTreeQuery method) veclength() (in module fsl.transform.affine) verbose (fsl.utils.fslsub.SubmitParams attribute) VERTEX_ANNOT_FILES (in module fsl.data.freesurfer) VERTEX_DATA_EXTENSIONS (in module fsl.data.gifti) VERTEX_DATA_FILES (in module fsl.data.freesurfer) VERTEX_LABEL_FILES (in module fsl.data.freesurfer) VERTEX_MGH_FILES (in module fsl.data.freesurfer)

vertexDataSets() (fsl.data.mesh.Mesh method) vertexSets() (fsl.data.mesh.Mesh method) vertices (fsl.data.mesh.Mesh property) vnormals (fsl.data.mesh.Mesh property) VolumeLabels (class in fsl.data.volumelabels) VoxelwiseConfoundEV (class in fsl.data.featdesign) VoxelwiseEV (class in fsl.data.featdesign) VoxelwiseEVMixin (class in fsl.data.featdesign) voxToScaledVoxMat (fsl.data.image.Nifti property) voxToSurfMat (fsl.data.mghimage.MGHImage property) voxToSurfMat() (in module fsl.data.mghimage) voxToWorldMat (fsl.data.image.Image property) (fsl.data.image.Nifti property) VTKMesh (class in fsl.data.vtk)

W

wait() (in module fsl.utils.idle) wait_for (fsl.utils.fslsub.SubmitParams attribute) waitUntilIdle() (fsl.utils.idle.TaskThread method) warn() (in module fsl.utils.deprecated) WeakFunctionRef (class in fsl.utils.weakfuncref) winpath() (in module fsl.utils.path) worldToSurfMat (fsl.data.mghimage.MGHImage property) worldToVoxMat (fsl.data.image.Nifti property) wrapperconfig (class in fsl.wrappers.wrapperutils) write() (fsl.utils.settings.Settings method) (in module fsl.utils.settings) writeConfigFile() (fsl.utils.settings.Settings method) writeFile() (fsl.utils.settings.Settings method) (in module fsl.utils.settings)

writeFlirt() (in module fsl.transform.flirt) writeLinearX5() (in module fsl.transform.x5) writeNonLinearX5() (in module fsl.transform.x5) wsl (fsl.utils.platform.Platform property) wslcmd() (in module fsl.utils.run) wslpath() (in module fsl.utils.path) WX_GTK (in module fsl.utils.platform) WX_MAC_CARBON (in module fsl.utils.platform) WX_MAC_COCOA (in module fsl.utils.platform) WX_PHOENIX (in module fsl.utils.platform) WX_PYTHON (in module fsl.utils.platform) WX_UNKNOWN (in module fsl.utils.platform) wxFlavour (fsl.utils.platform.Platform property) wxPlatform (fsl.utils.platform.Platform property)

X

X5Error X5ToFlirt() (in module fsl.scripts.fsl_convert_x5) X5ToFnirt() (in module fsl.scripts.fsl_convert_x5)

xfibres() (in module fsl.wrappers.bedpostx) xfibres_gpu() (in module fsl.wrappers.bedpostx) XFIBRES_VALMAP (in module fsl.wrappers.bedpostx) xyzUnits (fsl.data.image.Nifti property)

Z

ztop() (fsl.wrappers.fslmaths.fslmaths method)