fsl.wrappers.fsl_mrs_proc

This module provides wrapper functions for fsl_mrs_proc and its subcommands.

coilcombine	Wrapper for the fsl_mrs_proc coilcombine command.
average	Wrapper for the fsl_mrs_proc average command.
align	Wrapper for the fsl_mrs_proc align command.
align_diff	Wrapper for the fsl_mrs_proc align-diff command.
ecc	Wrapper for the fsl_mrs_proc ecc command.
remove	Wrapper for the fsl_mrs_proc remove command.
model	Wrapper for the fsl_mrs_proc model command.
tshift	Wrapper for the fsl_mrs_proc tshift command.
truncate	Wrapper for the fsl_mrs_proc truncate command.
apodize	Wrapper for the fsl_mrs_proc apodize command.
fshift	Wrapper for the fsl_mrs_proc fshift command.
unlike	Wrapper for the fsl_mrs_proc unlike command.
phase	Wrapper for the fsl_mrs_proc phase command.
fixed_phase	Wrapper for the fsl_mrs_proc fixed_phase command.
subtract	Wrapper for the fsl_mrs_proc subtract command.
add	Wrapper for the fsl_mrs_proc add command.
conj	Wrapper for the fsl_mrs_proc conj command.
mrsi_align	Wrapper for the fsl_mrs_proc mrsi-align command.
mrsi_lipid	Wrapper for the fsl_mrs_proc mrsi-lipid command.

fsl.wrappers.fsl_mrs_proc.coilcombine(file, output, **kwargs)

Wrapper for the fsl_mrs_proc coilcombine command. The following arguments are currently supported: file, output, reference, no_prewhiten, covariance, noise, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.average(file, output, **kwargs)

Wrapper for the fsl_mrs_proc average command. The following arguments are currently supported: file, output, dim, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.align(file, output, **kwargs)

Wrapper for the fsl_mrs_proc align command. The following arguments are currently supported: file, output, dim, ppm, reference, window, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.align_diff(file, output, **kwargs)

Wrapper for the fsl_mrs_proc align-diff command. The following arguments are currently supported: file, output, dim, dim_diff, ppm, diff_type, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.ecc(file, reference, output, **kwargs)

Wrapper for the fsl_mrs_proc ecc command. The following arguments are currently supported: file, reference, output, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.remove(file, output, **kwargs)

Wrapper for the fsl_mrs_proc remove command. The following arguments are currently supported: file, output, ppm, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.model(file, output, **kwargs)

Wrapper for the fsl_mrs_proc model command. The following arguments are currently supported: file, output, ppm, components, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.tshift(file, output, **kwargs)

Wrapper for the fsl_mrs_proc tshift command. The following arguments are currently supported: file, output, tshiftStart, tshiftEnd, samples, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.truncate(file, output, **kwargs)

Wrapper for the fsl_mrs_proc truncate command. The following arguments are currently supported: file, output, points, pos, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.apodize(file, output, **kwargs)

Wrapper for the fsl_mrs_proc apodize command. The following arguments are currently supported: file, output, filter, amount, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.fshift(file, output, **kwargs)

Wrapper for the fsl_mrs_proc fshift command. The following arguments are currently supported: file, output, shiftppm, shifthz, shiftRef, ppm, target, use_avg, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.unlike(file, output, **kwargs)

Wrapper for the fsl_mrs_proc unlike command. The following arguments are currently supported: file, output, sd, iter, ppm, outputbad, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.phase(file, output, **kwargs)

Wrapper for the fsl_mrs_proc phase command. The following arguments are currently supported: file, output, ppm, hlsvd, use_avg, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.fixed_phase(file, output, **kwargs)

Wrapper for the fsl_mrs_proc fixed_phase command. The following arguments are currently supported: file, output, p0, p1, p1_type, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.subtract(file, output, **kwargs)

Wrapper for the fsl_mrs_proc subtract command. The following arguments are currently supported: file, output, reference, dim, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.add(file, output, **kwargs)

Wrapper for the fsl_mrs_proc add command. The following arguments are currently supported: file, output, reference, dim, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.conj(file, output, **kwargs)

Wrapper for the fsl_mrs_proc conj command. The following arguments are currently supported: file, output, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.mrsi_align(file, output, **kwargs)

Wrapper for the fsl_mrs_proc mrsi-align command. The following arguments are currently supported: file, output, mask, freq_align, zpad, phase-correct, ppm, save_params, overwrite, r/generateReports, allreports, filename, verbose.

fsl.wrappers.fsl_mrs_proc.mrsi_lipid(file, output, **kwargs)

Wrapper for the fsl_mrs_proc mrsi-lipid command. The following arguments are currently supported: file, output, mask, beta, overwrite, r/generateReports, allreports, filename, verbose.