fsl.wrappers.first

This module contains wrapper functions for the FSL FIRST commands, for subcortical segmentation.

fsl.wrappers.first.first(input, outputName, inputModel, flirtMatrix, **kwargs)

Wrapper function for the FSL first command.

fsl.wrappers.first.first_flirt(input, output, **kwargs)

Wrapper function for the FSL first_flirt command.

fsl.wrappers.first.run_first(input, input_to_mni, n_modes, output_basename, model_name, **kwargs)

Wrapper for the FSL run_first command.

fsl.wrappers.first.run_first_all(input, output, **kwargs)

Wrapper for the FSL run_first_all command. Use three=True to apply the -3 argument.

fsl.wrappers.first.first_utils(input, output, **kwargs)

Wrapper for the FSL first_utils command.

fsl.wrappers.first.concat_bvars(output, *inputs)

Wrapper for the FSL concat_bvars command.