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Which tools automatically submit themselves to a cluster queue

The following FSL programs/scripts are able to self-submit in a HPC cluster and should not be used in conjunction with fsl_sub.

  • FDT
  • bedpostx
  • FEAT
  • feat
  • feat_gm_prepare
  • FIRST
  • run_first_all
  • FSLVBM
  • fslvbm_2_template
  • fslvbm_3_proc
  • POSSUM
  • possumX
  • RANDOMISE
  • randomise_parallel
  • TBSS
  • tbss_2_reg
  • GUIs that self-submit
  • FDT
  • FDT GUI ( probtrackx only )
  • FEAT
  • FEAT GUI
  • FLIRT
  • FLIRT GUI
  • POSSUM
  • POSSUM GUI

Note that all other FSL GUIs will only run jobs on the local machine, to submit to a cluster you must use the equivalent command-line call in conjunction with fsl_sub.