Tutorials

Below we provide some example tutorials which walk through how you can manipulate or combine the MRI and microscopy data in BigMac.

• Using TIRL to map between MRI and microscopy data in BigMac
  • Load data and warpfields
  • Inbuilt functions
  • Combining warpfields from tirl and flirt/fnirt
  • Mapping coordinates
  • Mapping vectors
  • Interpolating / resampling data
  • Manipulating nifti volumes
• TIRL demo - mapping microscopy to MRI
  • Load and visualise the microscopy and MRI
  • Run TIRL registration
  • Map microscopy to MRI using tirl warpfields
  • Plot correlation of MRI and microcopy
• Coregistered ODFs and ODI