Index

_

__call__() (fsl_pipe.job.JobParent method) (fsl_pipe.pipeline.Pipeline method) (fsl_pipe.pipeline.PlaceHolder method) (fsl_pipe.pipeline.Template method) __init__() (fsl_pipe.job.BatchJob method) (fsl_pipe.job.FileTarget method) (fsl_pipe.job.InputMissingPipe method) (fsl_pipe.job.JobList method) (fsl_pipe.job.SingleJob method) (fsl_pipe.pipeline.PipedFunction method) (fsl_pipe.pipeline.Pipeline method) (fsl_pipe.pipeline.PlaceHolder method) (fsl_pipe.pipeline.Template method)

A

add_node() (fsl_pipe.pipeline.PipedFunction method) add_to_graph() (fsl_pipe.pipeline.Pipeline method)

add_to_jobs() (fsl_pipe.job.JobParent method) all_placeholders() (fsl_pipe.pipeline.PipedFunction method)

B

batch (fsl_pipe.job.BatchJob property) batch() (fsl_pipe.job.JobList method)

batch_connected_jobs() (in module fsl_pipe.job) batch_unconnected_jobs() (in module fsl_pipe.job) BatchJob (class in fsl_pipe.job)

C

call_batched_jobs() (in module fsl_pipe.job) check_submit_parameters() (in module fsl_pipe.pipeline) cli() (fsl_pipe.pipeline.Pipeline method) configure() (fsl_pipe.pipeline.PipedFunction method) (fsl_pipe.pipeline.Pipeline method)

copy() (fsl_pipe.job.BatchJob method) (fsl_pipe.job.JobList method) (fsl_pipe.job.SingleJob method) (fsl_pipe.pipeline.PipedFunction method)

D

dask (fsl_pipe.job.RunMethod attribute) default() (fsl_pipe.job.RunMethod method)

default_parser() (fsl_pipe.pipeline.Pipeline method) dependencies() (fsl_pipe.job.JobParent method)

E

exists() (fsl_pipe.job.FileTarget method)

expected() (fsl_pipe.job.FileTarget method) (fsl_pipe.job.JobParent method)

F

FileTarget (class in fsl_pipe.job) filter() (fsl_pipe.job.JobList method) filter_templates() (fsl_pipe.pipeline.PipedFunction method) find() (fsl_pipe.pipeline.Pipeline method) fsl_pipe module

fsl_pipe.datalad module fsl_pipe.job module fsl_pipe.pipeline module function() (fsl_pipe.job.BatchJob static method)

G

generate_jobs() (fsl_pipe.pipeline.Pipeline method) get_dataset() (in module fsl_pipe.datalad) get_jobs() (fsl_pipe.pipeline.PipedFunction method)

get_matching_targets() (in module fsl_pipe.job) get_target() (in module fsl_pipe.job) get_tree() (in module fsl_pipe.datalad) gui() (fsl_pipe.pipeline.Pipeline method)

H

has_dependencies() (in module fsl_pipe.job)

I

In (in module fsl_pipe.pipeline) index (fsl_pipe.pipeline.PlaceholderValue attribute) input (fsl_pipe.pipeline.Template attribute)

input_targets (fsl_pipe.job.JobParent attribute) InputMissingPipe InputMissingRun iter_over() (fsl_pipe.pipeline.PipedFunction method)

J

job_name() (fsl_pipe.job.BatchJob method) (fsl_pipe.job.SingleJob method)

JobList (class in fsl_pipe.job) JobParent (class in fsl_pipe.job)

K

key (fsl_pipe.pipeline.PlaceHolder attribute) (fsl_pipe.pipeline.PlaceholderValue attribute) (fsl_pipe.pipeline.Template attribute)

kwargs (fsl_pipe.job.BatchJob property) (fsl_pipe.pipeline.PipedFunction property)

L

local (fsl_pipe.job.RunMethod attribute)

M

merge() (fsl_pipe.pipeline.Pipeline class method) missing_input() (fsl_pipe.job.JobParent method) missing_output() (fsl_pipe.job.JobParent method) module fsl_pipe fsl_pipe.datalad fsl_pipe.job fsl_pipe.pipeline

move_to_subtree() (fsl_pipe.pipeline.PipedFunction method) (fsl_pipe.pipeline.Pipeline method)

N

no_iter (fsl_pipe.pipeline.PipedFunction property) (fsl_pipe.pipeline.PlaceHolder attribute)

O

optional (fsl_pipe.pipeline.Template attribute) optional_targets (fsl_pipe.job.JobParent attribute) Out (in module fsl_pipe.pipeline)

output (fsl_pipe.pipeline.Template attribute) output_targets (fsl_pipe.job.JobParent attribute) OutputMissing

P

PipedFunction (class in fsl_pipe.pipeline) Pipeline (class in fsl_pipe.pipeline) PlaceHolder (class in fsl_pipe.pipeline)

placeholders (fsl_pipe.pipeline.PipedFunction property) PlaceholderValue (class in fsl_pipe.pipeline) prepare_run() (fsl_pipe.job.JobParent method) producer (fsl_pipe.job.FileTarget property)

R

Ref (in module fsl_pipe.pipeline) remove() (fsl_pipe.pipeline.Pipeline method) report() (fsl_pipe.job.JobList method) reset_existence() (fsl_pipe.job.FileTarget method)

run() (fsl_pipe.job.JobList method) run_cli() (fsl_pipe.pipeline.Pipeline method) run_datalad() (fsl_pipe.job.JobList method) RunMethod (class in fsl_pipe.job)

S

scale_jobtime() (fsl_pipe.job.BatchJob method) (fsl_pipe.job.JobList method) (fsl_pipe.job.SingleJob method)

SingleJob (class in fsl_pipe.job) split_pipeline() (fsl_pipe.job.JobList method) submit (fsl_pipe.job.RunMethod attribute) submit_params (fsl_pipe.job.BatchJob property)

T

Template (class in fsl_pipe.pipeline) templates (fsl_pipe.pipeline.PipedFunction property)

to_job_list() (fsl_pipe.job.BatchJob method) (fsl_pipe.job.SingleJob method) to_templates_dict() (in module fsl_pipe.pipeline)

U

update_closure() (in module fsl_pipe.job)

V

value (fsl_pipe.pipeline.PlaceholderValue attribute)