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6.0.6.1

6.0.6.1, 5th December 2022

fsl-base 2209.0 --> 2212.0

  • BF: don't add "None" to candidate list
  • DOC: Changelog
  • RF: Search for mamba/conda on $PATH, fall back to conda shell function if can't find
  • DOC: Changelog
  • MNT: Prefer mamba over conda if it is available
  • DOC: Changelog
  • BF: Use conda platform identifiers, not FSL platform identifiers
  • TEST: update fsl-installer version used in test (old versions have been removed from channel)
  • DOC: changelog
  • BF: Should not be pinging defaults channel

fsl-gps 2111.0 --> 2211.0

  • MNT: qualify string namespace
  • ENH: Multishell
  • Major rewrite to enable simultaneous optimisation of multiple shells

fsl-installer 2.1.0 --> 3.0.0

  • TEST: fix test
  • DOC: changelog
  • ENH: Ability to provide custom progress reporting function to Process.monitor_progress, as an alternative to reading #lines on stdout. Monitor number of files in $FSLDIR/pkgs/, instead of #lines of stdout, to report progress on main FSL installation, as mamba does not print package download progress to stdout.
  • RF: Make installer compatible with non-mamba envs
  • MNT: abstract out conda, so we can switch between mamba/conda
  • MNT: Fix progress endline; don't log tput calls
  • TEST: update installer tests (no longer have a "conda install" command)
  • MNT: Revert to single-step installation method
  • MNT: make file for FSL installs
  • MNT: version
  • DOC: changelog
  • MNT: Insert insertcopyright hooks

fsl_mrs 2.0.8 --> 2.0.9

  • Fix inverted peak QC issues.
  • Added normalisation to the segmentation scripst, all voxels should now sum to 1.