Index

_

__call__() (pipe_tree.job.JobParent method) (pipe_tree.pipeline.Pipeline method) (pipe_tree.pipeline.PlaceHolder method) (pipe_tree.pipeline.Template method) __init__() (pipe_tree.job.BatchJob method) (pipe_tree.job.FileTarget method) (pipe_tree.job.InputMissingPipe method) (pipe_tree.job.JobList method) (pipe_tree.job.SingleJob method) (pipe_tree.pipeline.PipedFunction method) (pipe_tree.pipeline.Pipeline method) (pipe_tree.pipeline.PlaceHolder method) (pipe_tree.pipeline.Template method)

A

add_node() (pipe_tree.pipeline.PipedFunction method) add_to_graph() (pipe_tree.pipeline.Pipeline method)

add_to_jobs() (pipe_tree.job.JobParent method) all_placeholders() (pipe_tree.pipeline.PipedFunction method)

B

batch (pipe_tree.job.BatchJob property) batch() (pipe_tree.job.JobList method)

batch_connected_jobs() (in module pipe_tree.job) batch_unconnected_jobs() (in module pipe_tree.job) BatchJob (class in pipe_tree.job)

C

call_batched_jobs() (in module pipe_tree.job) check_submit_parameters() (in module pipe_tree.pipeline) cli() (pipe_tree.pipeline.Pipeline method)

configure() (pipe_tree.pipeline.PipedFunction method) (pipe_tree.pipeline.Pipeline method) copy() (pipe_tree.pipeline.PipedFunction method)

D

dask (pipe_tree.job.RunMethod attribute) default() (pipe_tree.job.RunMethod method)

default_parser() (pipe_tree.pipeline.Pipeline method) dependencies() (pipe_tree.job.JobParent method)

E

exists() (pipe_tree.job.FileTarget method)

expected() (pipe_tree.job.FileTarget method)

F

FileTarget (class in pipe_tree.job) filter() (pipe_tree.job.JobList method)

filter_templates() (pipe_tree.pipeline.PipedFunction method) find() (pipe_tree.pipeline.Pipeline method) function() (pipe_tree.job.BatchJob static method)

G

generate_jobs() (pipe_tree.pipeline.Pipeline method) get_dataset() (in module pipe_tree.datalad) get_jobs() (pipe_tree.pipeline.PipedFunction method)

get_matching_targets() (in module pipe_tree.job) get_target() (in module pipe_tree.job) get_tree() (in module pipe_tree.datalad)

H

has_dependencies() (in module pipe_tree.job)

I

In (in module pipe_tree.pipeline) index (pipe_tree.pipeline.PlaceholderValue attribute) input (pipe_tree.pipeline.Template attribute)

input_targets (pipe_tree.job.JobParent attribute) InputMissingPipe InputMissingRun iter_over() (pipe_tree.pipeline.PipedFunction method)

J

job_name() (pipe_tree.job.BatchJob method) (pipe_tree.job.SingleJob method)

JobList (class in pipe_tree.job) JobParent (class in pipe_tree.job)

K

key (pipe_tree.pipeline.PlaceHolder attribute) (pipe_tree.pipeline.PlaceholderValue attribute) (pipe_tree.pipeline.Template attribute)

kwargs (pipe_tree.job.BatchJob property) (pipe_tree.pipeline.PipedFunction property)

L

local (pipe_tree.job.RunMethod attribute)

M

merge() (pipe_tree.pipeline.Pipeline class method) missing_input() (pipe_tree.job.JobParent method) missing_output() (pipe_tree.job.JobParent method) module pipe_tree pipe_tree.datalad pipe_tree.job pipe_tree.pipeline

move_to_subtree() (pipe_tree.pipeline.PipedFunction method) (pipe_tree.pipeline.Pipeline method)

N

no_iter (pipe_tree.pipeline.PipedFunction property) (pipe_tree.pipeline.PlaceHolder attribute)

O

optional (pipe_tree.pipeline.Template attribute) optional_targets (pipe_tree.job.JobParent attribute) Out (in module pipe_tree.pipeline)

output (pipe_tree.pipeline.Template attribute) output_targets (pipe_tree.job.JobParent attribute) OutputMissing

P

pipe_tree module pipe_tree.datalad module pipe_tree.job module pipe_tree.pipeline module

PipedFunction (class in pipe_tree.pipeline) Pipeline (class in pipe_tree.pipeline) PlaceHolder (class in pipe_tree.pipeline) placeholders (pipe_tree.pipeline.PipedFunction property) PlaceholderValue (class in pipe_tree.pipeline) prepare_run() (pipe_tree.job.JobParent method) producer (pipe_tree.job.FileTarget property)

R

Ref (in module pipe_tree.pipeline) remove() (pipe_tree.pipeline.Pipeline method) report() (pipe_tree.job.JobList method) reset_existence() (pipe_tree.job.FileTarget method)

run() (pipe_tree.job.JobList method) run_cli() (pipe_tree.pipeline.Pipeline method) run_datalad() (pipe_tree.job.JobList method) RunMethod (class in pipe_tree.job)

S

SingleJob (class in pipe_tree.job)

submit (pipe_tree.job.RunMethod attribute) submit_params (pipe_tree.job.BatchJob property)

T

Template (class in pipe_tree.pipeline)

templates (pipe_tree.pipeline.PipedFunction property) to_templates_dict() (in module pipe_tree.pipeline)

U

update_closure() (in module pipe_tree.job)

V

value (pipe_tree.pipeline.PlaceholderValue attribute)