input group-{group} sub-{subject} group-{group}_sub-{subject}_T1w.nii.gz (T1w) output group-{group} sub-{subject} T1w_brain_first_attempt.nii.gz T1w_cut.nii.gz T1w_brain.nii.gz ->fast basename=run_fast (segment) xfms gm_pve2standard.mat (linear_reg) gm_pve2standard.nii.gz (nonlinear_reg) gm_pve_in_standard.nii.gz (gm_pve_in_standard) gm_pve_in_template.nii.gz gm_pve_jac.nii.gz gm_pve_mod.nii.gz template gm_pve_avg.nii.gz (gm_pve_template)