Data & code availability
========================

Data availability
-----------------

The BigMac data are openly available via the Digital Brain Bank, where you can also view some of the coregistered MRI and microscopy data using the interactive viewer: https://open.win.ox.ac.uk/DigitalBrainBank/#/datasets/anatomist

Z-stat maps linking fMRI and behaviour from the same animal are available via Grohn 2020 (doi:10.1371/journal.pbio.3000899) and Sallet 2020 (doi:10.1371/journal.pbio.3000605). Complementary in vivo data from another 19 subjects (structural and resting-state fMRI) are available via the primate data exchange (PRIME-DE): https://fcon\_1000.projects.nitrc.org/indi/PRIME/oxford.html.

To help you navigate through the data and understand what files are available, the links below describe the naming and structure of the postmortem files in BigMac.

Code availability
-----------------
Code to help you get working with the data is available at: https://git.fmrib.ox.ac.uk/amyh/bigmacanalysis

This includes basic MRI-microscopy tutorials, notebooks showing how you can assess the quality of the MRI-microscopy coregistration for some microscopy slide of interest, scripts related to data preprocessing, and code to reproduce the analyses and Figures in the paper.


.. toctree::
   :maxdepth: 2

   filetree